miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6866 3' -55.4 NC_001875.2 + 10932 0.71 0.624288
Target:  5'- cGCgGUGuUGCGCCACAAAaacgugGUGGCg -3'
miRNA:   3'- aCGgCGC-GCGUGGUGUUUcua---CACCG- -5'
6866 3' -55.4 NC_001875.2 + 38281 0.75 0.425951
Target:  5'- cGCagCGCGCGUACgACGAcGcgGUGGCg -3'
miRNA:   3'- aCG--GCGCGCGUGgUGUUuCuaCACCG- -5'
6866 3' -55.4 NC_001875.2 + 40432 0.74 0.453571
Target:  5'- gGCUGaCGCGCGCCAUcGAGAacgUG-GGCa -3'
miRNA:   3'- aCGGC-GCGCGUGGUGuUUCU---ACaCCG- -5'
6866 3' -55.4 NC_001875.2 + 50366 0.74 0.480203
Target:  5'- gGCCGCGCGCGCCACu--GAccgcggaccagcgUGUacuuuuugcggacGGCg -3'
miRNA:   3'- aCGGCGCGCGUGGUGuuuCU-------------ACA-------------CCG- -5'
6866 3' -55.4 NC_001875.2 + 29270 0.73 0.52051
Target:  5'- gGCCGCcgacCGCGCCgGCGGGGcgcggucGUGUGGCg -3'
miRNA:   3'- aCGGCGc---GCGUGG-UGUUUC-------UACACCG- -5'
6866 3' -55.4 NC_001875.2 + 17101 0.73 0.531553
Target:  5'- aGCCGCGCGCcacuggcgGCCGCAuaagcAAGcAUuUGGCg -3'
miRNA:   3'- aCGGCGCGCG--------UGGUGU-----UUC-UAcACCG- -5'
6866 3' -55.4 NC_001875.2 + 41287 0.73 0.531553
Target:  5'- cGCCcuucGCGCGUACCGCAucaacauGGAcgagGUGGUg -3'
miRNA:   3'- aCGG----CGCGCGUGGUGUu------UCUa---CACCG- -5'
6866 3' -55.4 NC_001875.2 + 61026 0.73 0.541665
Target:  5'- aGCCGCGCuCGCCaACAcuuuGAGAU-UGGCa -3'
miRNA:   3'- aCGGCGCGcGUGG-UGU----UUCUAcACCG- -5'
6866 3' -55.4 NC_001875.2 + 95278 0.72 0.572356
Target:  5'- cGCCGCGUGCgucgguauGCaCACGGGGAcgGUGcGCg -3'
miRNA:   3'- aCGGCGCGCG--------UG-GUGUUUCUa-CAC-CG- -5'
6866 3' -55.4 NC_001875.2 + 18160 0.75 0.425951
Target:  5'- gUGCgGCGCGCGCgACGccGccacUGUGGCg -3'
miRNA:   3'- -ACGgCGCGCGUGgUGUuuCu---ACACCG- -5'
6866 3' -55.4 NC_001875.2 + 74579 0.75 0.425048
Target:  5'- cUGCaCGaCGCGUACC-CAAuaaacgcAGAUGUGGCc -3'
miRNA:   3'- -ACG-GC-GCGCGUGGuGUU-------UCUACACCG- -5'
6866 3' -55.4 NC_001875.2 + 95402 0.75 0.399357
Target:  5'- aGCCGCaGCGCGCCggcgucGCAAAGGUaaGGCc -3'
miRNA:   3'- aCGGCG-CGCGUGG------UGUUUCUAcaCCG- -5'
6866 3' -55.4 NC_001875.2 + 42505 0.81 0.185862
Target:  5'- cGuCCGCGUGCGCCGCAAAGcUGaGGCc -3'
miRNA:   3'- aC-GGCGCGCGUGGUGUUUCuACaCCG- -5'
6866 3' -55.4 NC_001875.2 + 44405 0.8 0.227417
Target:  5'- gGCgCGCGCGCACUGCAAGuuGGUGgGGCg -3'
miRNA:   3'- aCG-GCGCGCGUGGUGUUU--CUACaCCG- -5'
6866 3' -55.4 NC_001875.2 + 61946 0.79 0.238968
Target:  5'- cGCCGCguuugucgaccgGCGCGCCu---AGAUGUGGCa -3'
miRNA:   3'- aCGGCG------------CGCGUGGuguuUCUACACCG- -5'
6866 3' -55.4 NC_001875.2 + 45705 0.79 0.251005
Target:  5'- cGCCGCGCGCGCCGCGcacuGccGaUGGCc -3'
miRNA:   3'- aCGGCGCGCGUGGUGUuu--CuaC-ACCG- -5'
6866 3' -55.4 NC_001875.2 + 57721 0.77 0.304179
Target:  5'- cGUCGCGCGaCACCGCAAAGucgcGcGGCg -3'
miRNA:   3'- aCGGCGCGC-GUGGUGUUUCua--CaCCG- -5'
6866 3' -55.4 NC_001875.2 + 48043 0.77 0.318016
Target:  5'- cGCCcacaggcacgaggGCGCGCGCUACAAcGA-GUGGCa -3'
miRNA:   3'- aCGG-------------CGCGCGUGGUGUUuCUaCACCG- -5'
6866 3' -55.4 NC_001875.2 + 54457 0.76 0.373848
Target:  5'- aGCCGCG-GCGCCGCAcAGcGUGUgcGGCa -3'
miRNA:   3'- aCGGCGCgCGUGGUGUuUC-UACA--CCG- -5'
6866 3' -55.4 NC_001875.2 + 59145 0.75 0.399357
Target:  5'- -aCgGCGCGCACCGCGGAGcaaaaccugGUGaUGGCa -3'
miRNA:   3'- acGgCGCGCGUGGUGUUUC---------UAC-ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.