miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6866 3' -55.4 NC_001875.2 + 9901 1.11 0.001959
Target:  5'- cUGCCGCGCGCACCACAAAGAUGUGGCc -3'
miRNA:   3'- -ACGGCGCGCGUGGUGUUUCUACACCG- -5'
6866 3' -55.4 NC_001875.2 + 90384 0.85 0.113028
Target:  5'- cGCCGCGCGCGCCGCAAccGGcgccUGUGcGCg -3'
miRNA:   3'- aCGGCGCGCGUGGUGUU--UCu---ACAC-CG- -5'
6866 3' -55.4 NC_001875.2 + 12666 0.82 0.155143
Target:  5'- uUGuuGaCGCGCGCCGCGuuggccGGGUGUGGCg -3'
miRNA:   3'- -ACggC-GCGCGUGGUGUu-----UCUACACCG- -5'
6866 3' -55.4 NC_001875.2 + 77825 0.82 0.163418
Target:  5'- gUGCCgguacGCGCGCGCCGCAAGGccGUGcGCg -3'
miRNA:   3'- -ACGG-----CGCGCGUGGUGUUUCuaCAC-CG- -5'
6866 3' -55.4 NC_001875.2 + 42505 0.81 0.185862
Target:  5'- cGuCCGCGUGCGCCGCAAAGcUGaGGCc -3'
miRNA:   3'- aC-GGCGCGCGUGGUGUUUCuACaCCG- -5'
6866 3' -55.4 NC_001875.2 + 32579 0.8 0.21098
Target:  5'- gUGCCGCGCGCACCuCGAcuAGccGUGGg -3'
miRNA:   3'- -ACGGCGCGCGUGGuGUU--UCuaCACCg -5'
6866 3' -55.4 NC_001875.2 + 9719 0.8 0.216342
Target:  5'- gGCCGCGcCGCGCC-CGAAGc-GUGGCa -3'
miRNA:   3'- aCGGCGC-GCGUGGuGUUUCuaCACCG- -5'
6866 3' -55.4 NC_001875.2 + 94504 0.8 0.221821
Target:  5'- gGCCGCGCGCAaaguCCACAAAGuac-GGCa -3'
miRNA:   3'- aCGGCGCGCGU----GGUGUUUCuacaCCG- -5'
6866 3' -55.4 NC_001875.2 + 44405 0.8 0.227417
Target:  5'- gGCgCGCGCGCACUGCAAGuuGGUGgGGCg -3'
miRNA:   3'- aCG-GCGCGCGUGGUGUUU--CUACaCCG- -5'
6866 3' -55.4 NC_001875.2 + 61946 0.79 0.238968
Target:  5'- cGCCGCguuugucgaccgGCGCGCCu---AGAUGUGGCa -3'
miRNA:   3'- aCGGCG------------CGCGUGGuguuUCUACACCG- -5'
6866 3' -55.4 NC_001875.2 + 45705 0.79 0.251005
Target:  5'- cGCCGCGCGCGCCGCGcacuGccGaUGGCc -3'
miRNA:   3'- aCGGCGCGCGUGGUGUuu--CuaC-ACCG- -5'
6866 3' -55.4 NC_001875.2 + 113689 0.78 0.269992
Target:  5'- cGUCGCGCGCGCCGCAccAGuaacucacaGUGGCg -3'
miRNA:   3'- aCGGCGCGCGUGGUGUu-UCua-------CACCG- -5'
6866 3' -55.4 NC_001875.2 + 97393 0.78 0.276573
Target:  5'- uUGCUGCGCGCGCaugGCGuuGAUG-GGCg -3'
miRNA:   3'- -ACGGCGCGCGUGg--UGUuuCUACaCCG- -5'
6866 3' -55.4 NC_001875.2 + 57721 0.77 0.304179
Target:  5'- cGUCGCGCGaCACCGCAAAGucgcGcGGCg -3'
miRNA:   3'- aCGGCGCGC-GUGGUGUUUCua--CaCCG- -5'
6866 3' -55.4 NC_001875.2 + 48043 0.77 0.318016
Target:  5'- cGCCcacaggcacgaggGCGCGCGCUACAAcGA-GUGGCa -3'
miRNA:   3'- aCGG-------------CGCGCGUGGUGUUuCUaCACCG- -5'
6866 3' -55.4 NC_001875.2 + 54457 0.76 0.373848
Target:  5'- aGCCGCG-GCGCCGCAcAGcGUGUgcGGCa -3'
miRNA:   3'- aCGGCGCgCGUGGUGUuUC-UACA--CCG- -5'
6866 3' -55.4 NC_001875.2 + 86332 0.76 0.382227
Target:  5'- -aCUGCGUGCugCACAAGuGUGUGGUg -3'
miRNA:   3'- acGGCGCGCGugGUGUUUcUACACCG- -5'
6866 3' -55.4 NC_001875.2 + 86145 0.75 0.399357
Target:  5'- cGCgGCGCGCGCgGCGAgaugacGGAcGUGGUg -3'
miRNA:   3'- aCGgCGCGCGUGgUGUU------UCUaCACCG- -5'
6866 3' -55.4 NC_001875.2 + 95402 0.75 0.399357
Target:  5'- aGCCGCaGCGCGCCggcgucGCAAAGGUaaGGCc -3'
miRNA:   3'- aCGGCG-CGCGUGG------UGUUUCUAcaCCG- -5'
6866 3' -55.4 NC_001875.2 + 59145 0.75 0.399357
Target:  5'- -aCgGCGCGCACCGCGGAGcaaaaccugGUGaUGGCa -3'
miRNA:   3'- acGgCGCGCGUGGUGUUUC---------UAC-ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.