miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6866 3' -55.4 NC_001875.2 + 272 0.67 0.829017
Target:  5'- uUGCCGCGCGUugucguugaacuCCACGuuGAcGgacacgGGCg -3'
miRNA:   3'- -ACGGCGCGCGu-----------GGUGUuuCUaCa-----CCG- -5'
6866 3' -55.4 NC_001875.2 + 333 0.67 0.830727
Target:  5'- aGCCGCugcaccGCGCGCCGCAGAcugucGAucUGcacguUGGCc -3'
miRNA:   3'- aCGGCG------CGCGUGGUGUUU-----CU--AC-----ACCG- -5'
6866 3' -55.4 NC_001875.2 + 371 0.68 0.785903
Target:  5'- cGCCGacgGCGUACCAguCGAAuGAccgcgcguaguUGUGGCg -3'
miRNA:   3'- aCGGCg--CGCGUGGU--GUUU-CU-----------ACACCG- -5'
6866 3' -55.4 NC_001875.2 + 1164 0.67 0.866333
Target:  5'- gGCCGCGUGCcguGCauguugacauucauaCAUGAAGAgcuguaGUGGCa -3'
miRNA:   3'- aCGGCGCGCG---UG---------------GUGUUUCUa-----CACCG- -5'
6866 3' -55.4 NC_001875.2 + 1833 0.66 0.870873
Target:  5'- aUGCCGcCGC-CGCCGCcaaugguAGAUuUGGCc -3'
miRNA:   3'- -ACGGC-GCGcGUGGUGuu-----UCUAcACCG- -5'
6866 3' -55.4 NC_001875.2 + 1885 0.66 0.899032
Target:  5'- cGCCGcCGC-CGCCGCcaaugguAGAUuUGGCc -3'
miRNA:   3'- aCGGC-GCGcGUGGUGuu-----UCUAcACCG- -5'
6866 3' -55.4 NC_001875.2 + 3181 0.68 0.813301
Target:  5'- aGCCGgcggcCGCGCACCAgAGacAGGuUGcGGCg -3'
miRNA:   3'- aCGGC-----GCGCGUGGUgUU--UCU-ACaCCG- -5'
6866 3' -55.4 NC_001875.2 + 4434 0.67 0.858594
Target:  5'- aUGCUGaCGCGCGCCGCcagcacuuUGGCc -3'
miRNA:   3'- -ACGGC-GCGCGUGGUGuuucuac-ACCG- -5'
6866 3' -55.4 NC_001875.2 + 5916 0.68 0.79427
Target:  5'- cGCCG-GCauggcguuggguaGCGCCGCGcAGGUG-GGCg -3'
miRNA:   3'- aCGGCgCG-------------CGUGGUGUuUCUACaCCG- -5'
6866 3' -55.4 NC_001875.2 + 6289 0.66 0.891662
Target:  5'- aGcCCGUGCguccaauGCACCGCAAcaAGcAUGguggGGCa -3'
miRNA:   3'- aC-GGCGCG-------CGUGGUGUU--UC-UACa---CCG- -5'
6866 3' -55.4 NC_001875.2 + 7042 0.66 0.899032
Target:  5'- gGCCGCGCGCuugucgGCCugGuuccGcUGcGGCg -3'
miRNA:   3'- aCGGCGCGCG------UGGugUuu--CuACaCCG- -5'
6866 3' -55.4 NC_001875.2 + 8477 0.67 0.847401
Target:  5'- cGUCGCGCGgaaaCACCACGccGGGcgccguccGUGUGGg -3'
miRNA:   3'- aCGGCGCGC----GUGGUGU--UUC--------UACACCg -5'
6866 3' -55.4 NC_001875.2 + 9007 0.66 0.905479
Target:  5'- cGUCGCgGCGCACCAaauccGA-GUGuGCa -3'
miRNA:   3'- aCGGCG-CGCGUGGUguuu-CUaCAC-CG- -5'
6866 3' -55.4 NC_001875.2 + 9129 0.66 0.899032
Target:  5'- cGCCGUggacucGCGCGCCAguucGGUGUccacGGCg -3'
miRNA:   3'- aCGGCG------CGCGUGGUguuuCUACA----CCG- -5'
6866 3' -55.4 NC_001875.2 + 9376 0.71 0.640986
Target:  5'- gUGCUGCGCGCGCCGCAGccaacuuGCa -3'
miRNA:   3'- -ACGGCGCGCGUGGUGUUucuacacCG- -5'
6866 3' -55.4 NC_001875.2 + 9719 0.8 0.216342
Target:  5'- gGCCGCGcCGCGCC-CGAAGc-GUGGCa -3'
miRNA:   3'- aCGGCGC-GCGUGGuGUUUCuaCACCG- -5'
6866 3' -55.4 NC_001875.2 + 9901 1.11 0.001959
Target:  5'- cUGCCGCGCGCACCACAAAGAUGUGGCc -3'
miRNA:   3'- -ACGGCGCGCGUGGUGUUUCUACACCG- -5'
6866 3' -55.4 NC_001875.2 + 9921 0.66 0.898374
Target:  5'- cUGgCGCGCGgGCCGCAAguauucuAGcgGUGcuGCc -3'
miRNA:   3'- -ACgGCGCGCgUGGUGUU-------UCuaCAC--CG- -5'
6866 3' -55.4 NC_001875.2 + 10875 0.66 0.904845
Target:  5'- gGCCGCgucggugGCGCuGCCGCGcAAcGUGuUGGCg -3'
miRNA:   3'- aCGGCG-------CGCG-UGGUGU-UUcUAC-ACCG- -5'
6866 3' -55.4 NC_001875.2 + 10932 0.71 0.624288
Target:  5'- cGCgGUGuUGCGCCACAAAaacgugGUGGCg -3'
miRNA:   3'- aCGgCGC-GCGUGGUGUUUcua---CACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.