miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6879 3' -60.1 NC_001875.2 + 103940 0.66 0.698729
Target:  5'- -cGGGCuGCGAcGGCGGCcuguuGCAcaCGGCa -3'
miRNA:   3'- aaCCCG-CGCUcUUGCCG-----CGUcaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 89484 0.66 0.68777
Target:  5'- gUGGcgcccucGCGCcgcaaccgcuuGGGAAaGGUGCAGUUGGCg -3'
miRNA:   3'- aACC-------CGCG-----------CUCUUgCCGCGUCAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 21262 0.66 0.678763
Target:  5'- --aGGCGCGcGcGCGGCGCGGcuaCGaGCa -3'
miRNA:   3'- aacCCGCGCuCuUGCCGCGUCa--GC-CG- -5'
6879 3' -60.1 NC_001875.2 + 93402 0.66 0.65562
Target:  5'- -cGGGCGCGuuaaucagccguuuAGAAgaGGCGCugcaCGGCg -3'
miRNA:   3'- aaCCCGCGC--------------UCUUg-CCGCGuca-GCCG- -5'
6879 3' -60.1 NC_001875.2 + 91425 0.66 0.65562
Target:  5'- aUGGGcCGCagcucgcuguagcuGAGcGGCGGCGC-GUgGGCg -3'
miRNA:   3'- aACCC-GCG--------------CUC-UUGCCGCGuCAgCCG- -5'
6879 3' -60.1 NC_001875.2 + 34901 0.66 0.708634
Target:  5'- -cGaGCGCGAGAucaaGGCGCgccaguuuuuugGGUgCGGCg -3'
miRNA:   3'- aaCcCGCGCUCUug--CCGCG------------UCA-GCCG- -5'
6879 3' -60.1 NC_001875.2 + 129965 0.66 0.668719
Target:  5'- -gGcGGCgGCGGcGGCGGCGgCGG-CGGCa -3'
miRNA:   3'- aaC-CCG-CGCUcUUGCCGC-GUCaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 69239 0.66 0.678763
Target:  5'- --cGGCgGCGucGAACGGCGCgcuGGgccgCGGCu -3'
miRNA:   3'- aacCCG-CGCu-CUUGCCGCG---UCa---GCCG- -5'
6879 3' -60.1 NC_001875.2 + 31979 0.66 0.698729
Target:  5'- gUGuGGCGCGcGuACGGCcgguuugugaGCGG-CGGCg -3'
miRNA:   3'- aAC-CCGCGCuCuUGCCG----------CGUCaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 66307 0.66 0.688769
Target:  5'- -cGcGGCcgGCGAGuuGAUGGCGUGGgCGGCc -3'
miRNA:   3'- aaC-CCG--CGCUC--UUGCCGCGUCaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 16058 0.66 0.67776
Target:  5'- cUGGGaCGaauugcuCGAGGACGGCucGCGG-CGGUu -3'
miRNA:   3'- aACCC-GC-------GCUCUUGCCG--CGUCaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 10440 0.66 0.698729
Target:  5'- --uGGCGCagcagcuuuGAcGCGGCGCGG-CGGCg -3'
miRNA:   3'- aacCCGCGcu-------CU-UGCCGCGUCaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 131749 0.66 0.708634
Target:  5'- aUUGGGCcggcgGCGGaucGGGCGGCGCGucaUUGGUg -3'
miRNA:   3'- -AACCCG-----CGCU---CUUGCCGCGUc--AGCCG- -5'
6879 3' -60.1 NC_001875.2 + 2672 0.66 0.688769
Target:  5'- -gGcGGCGCcuGGGGcaacuGCGGCGCc-UCGGCa -3'
miRNA:   3'- aaC-CCGCG--CUCU-----UGCCGCGucAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 41456 0.66 0.668719
Target:  5'- --aGGCGCcGGuuGCGGCGCGcgCGGCg -3'
miRNA:   3'- aacCCGCGcUCu-UGCCGCGUcaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 95235 0.66 0.658646
Target:  5'- -gGuGGUGCaAGGGCGacGCGCAG-CGGCu -3'
miRNA:   3'- aaC-CCGCGcUCUUGC--CGCGUCaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 18434 0.66 0.678763
Target:  5'- --cGGCGCGA----GGCGCGGUCcGCg -3'
miRNA:   3'- aacCCGCGCUcuugCCGCGUCAGcCG- -5'
6879 3' -60.1 NC_001875.2 + 102000 0.66 0.668719
Target:  5'- --aGGUGcCGGGcACGGgGCcGUCGGCc -3'
miRNA:   3'- aacCCGC-GCUCuUGCCgCGuCAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 88158 0.66 0.688769
Target:  5'- gUGGGCGCacgacGGcaAACGGUGCauGGUCgaGGCg -3'
miRNA:   3'- aACCCGCGc----UC--UUGCCGCG--UCAG--CCG- -5'
6879 3' -60.1 NC_001875.2 + 31867 0.66 0.658646
Target:  5'- ---cGCGCGuGGACuGGCGCcgguugcaAGUUGGCg -3'
miRNA:   3'- aaccCGCGCuCUUG-CCGCG--------UCAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.