miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6879 3' -60.1 NC_001875.2 + 885 1.08 0.001177
Target:  5'- uUUGGGCGCGAGAACGGCGCAGUCGGCc -3'
miRNA:   3'- -AACCCGCGCUCUUGCCGCGUCAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 37415 0.8 0.109529
Target:  5'- --cGGCGCGuGGAagaggccgUGGCGCAGUCGGCg -3'
miRNA:   3'- aacCCGCGCuCUU--------GCCGCGUCAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 3107 0.78 0.141614
Target:  5'- -gGGGCGCGGcucGCGGCGCAGaccugggCGGCg -3'
miRNA:   3'- aaCCCGCGCUcu-UGCCGCGUCa------GCCG- -5'
6879 3' -60.1 NC_001875.2 + 66118 0.78 0.143062
Target:  5'- -cGGGCgGCGAG-GCGGCGCcgcccgcggaacaguGGUCGGCc -3'
miRNA:   3'- aaCCCG-CGCUCuUGCCGCG---------------UCAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 69627 0.77 0.168976
Target:  5'- gUUGGcGCGCGAGGugGaCGCcGUCGGCc -3'
miRNA:   3'- -AACC-CGCGCUCUugCcGCGuCAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 17844 0.77 0.168976
Target:  5'- -aGGGCGcCGAaAACgaGGUGCAGUCGGCc -3'
miRNA:   3'- aaCCCGC-GCUcUUG--CCGCGUCAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 80620 0.76 0.186661
Target:  5'- gUGGGCGCGcGGAACGcGCGCucgacgggCGGCg -3'
miRNA:   3'- aACCCGCGC-UCUUGC-CGCGuca-----GCCG- -5'
6879 3' -60.1 NC_001875.2 + 122792 0.75 0.216238
Target:  5'- --cGGCGCG-GAAacCGGCGCGGcCGGCg -3'
miRNA:   3'- aacCCGCGCuCUU--GCCGCGUCaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 67853 0.75 0.229152
Target:  5'- uUUGGGCGaCGGGGugcguCGccagauucugguucaGCGCGGUCGGCg -3'
miRNA:   3'- -AACCCGC-GCUCUu----GC---------------CGCGUCAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 41608 0.74 0.280833
Target:  5'- -cGGGCGCGGGcGCGG-GCA-UCGGUa -3'
miRNA:   3'- aaCCCGCGCUCuUGCCgCGUcAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 121514 0.73 0.294106
Target:  5'- -cGGGCGCGGGGcgaaacagguGCccaaacaccaGcGCGUAGUCGGCa -3'
miRNA:   3'- aaCCCGCGCUCU----------UG----------C-CGCGUCAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 61602 0.73 0.300924
Target:  5'- -cGGGCGCc--GGCGGCGCuucgggcuguGUCGGCg -3'
miRNA:   3'- aaCCCGCGcucUUGCCGCGu---------CAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 37105 0.73 0.314924
Target:  5'- gUGGGUguGCGGGcGCGGCGCcgcGcCGGCg -3'
miRNA:   3'- aACCCG--CGCUCuUGCCGCGu--CaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 53914 0.73 0.322107
Target:  5'- gUGGGCGCGccguuGCgGGCGC-GUUGGCg -3'
miRNA:   3'- aACCCGCGCucu--UG-CCGCGuCAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 99922 0.73 0.322107
Target:  5'- -cGGGcCGCGcGcGCGGUGCAGcgCGGCc -3'
miRNA:   3'- aaCCC-GCGCuCuUGCCGCGUCa-GCCG- -5'
6879 3' -60.1 NC_001875.2 + 2811 0.72 0.344384
Target:  5'- cUGGcgaGCGCGAGcGCGGCGaC-GUUGGCg -3'
miRNA:   3'- aACC---CGCGCUCuUGCCGC-GuCAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 1362 0.72 0.344384
Target:  5'- -cGGGUGCGAacgcucucGAACGGCGCGugcuagCGGUg -3'
miRNA:   3'- aaCCCGCGCU--------CUUGCCGCGUca----GCCG- -5'
6879 3' -60.1 NC_001875.2 + 122716 0.72 0.352052
Target:  5'- cUGGcGCGCGAGuccACGGCGUccgAGUucgUGGCg -3'
miRNA:   3'- aACC-CGCGCUCu--UGCCGCG---UCA---GCCG- -5'
6879 3' -60.1 NC_001875.2 + 47022 0.72 0.352052
Target:  5'- cUUGGGCacCGAGGGCGGaGUGGUgGGCg -3'
miRNA:   3'- -AACCCGc-GCUCUUGCCgCGUCAgCCG- -5'
6879 3' -60.1 NC_001875.2 + 12818 0.72 0.352052
Target:  5'- aUGGGgGU-AG-AUGGCGCGGUUGGCc -3'
miRNA:   3'- aACCCgCGcUCuUGCCGCGUCAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.