miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6879 3' -60.1 NC_001875.2 + 885 1.08 0.001177
Target:  5'- uUUGGGCGCGAGAACGGCGCAGUCGGCc -3'
miRNA:   3'- -AACCCGCGCUCUUGCCGCGUCAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 1056 0.69 0.480748
Target:  5'- gUUGGGCGCaacGuuGGCGaccGCGCGGUCaGGCu -3'
miRNA:   3'- -AACCCGCG---CucUUGC---CGCGUCAG-CCG- -5'
6879 3' -60.1 NC_001875.2 + 1362 0.72 0.344384
Target:  5'- -cGGGUGCGAacgcucucGAACGGCGCGugcuagCGGUg -3'
miRNA:   3'- aaCCCGCGCU--------CUUGCCGCGUca----GCCG- -5'
6879 3' -60.1 NC_001875.2 + 1522 0.7 0.453103
Target:  5'- uUUGGGUGCGGgcgcucucGAACGGCGCgugcuauuuuuAG-CGGUg -3'
miRNA:   3'- -AACCCGCGCU--------CUUGCCGCG-----------UCaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 1590 0.69 0.480748
Target:  5'- -cGGGUGCGAacgcucucGAACGGCGCgugcuauuuuuAG-CGGUg -3'
miRNA:   3'- aaCCCGCGCU--------CUUGCCGCG-----------UCaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 1656 0.69 0.480748
Target:  5'- -cGGGUGCGAacgcucucGAACGGCGCgugcuauuuuuAG-CGGUg -3'
miRNA:   3'- aaCCCGCGCU--------CUUGCCGCG-----------UCaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 1722 0.7 0.471439
Target:  5'- -cGGGUGCGAacgcucucGAACGGCGUgugcuAG-CGGUg -3'
miRNA:   3'- aaCCCGCGCU--------CUUGCCGCG-----UCaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 1782 0.69 0.480748
Target:  5'- -cGGGUGCGAacgcucucGAACGGCGCgugcuauuuuuAG-CGGUg -3'
miRNA:   3'- aaCCCGCGCU--------CUUGCCGCG-----------UCaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 2540 0.67 0.638447
Target:  5'- -cGGGC-CGGuGAacaACGGCGC-GUCGGg -3'
miRNA:   3'- aaCCCGcGCU-CU---UGCCGCGuCAGCCg -5'
6879 3' -60.1 NC_001875.2 + 2672 0.66 0.688769
Target:  5'- -gGcGGCGCcuGGGGcaacuGCGGCGCc-UCGGCa -3'
miRNA:   3'- aaC-CCGCG--CUCU-----UGCCGCGucAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 2811 0.72 0.344384
Target:  5'- cUGGcgaGCGCGAGcGCGGCGaC-GUUGGCg -3'
miRNA:   3'- aACC---CGCGCUCuUGCCGC-GuCAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 3045 0.68 0.587995
Target:  5'- gUUGGGCaGCGcguaAGAGgcGCGCAG-CGGCg -3'
miRNA:   3'- -AACCCG-CGC----UCUUgcCGCGUCaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 3107 0.78 0.141614
Target:  5'- -gGGGCGCGGcucGCGGCGCAGaccugggCGGCg -3'
miRNA:   3'- aaCCCGCGCUcu-UGCCGCGUCa------GCCG- -5'
6879 3' -60.1 NC_001875.2 + 3164 0.66 0.708634
Target:  5'- -cGGGCgGCGAGua-GGUG-AGcCGGCg -3'
miRNA:   3'- aaCCCG-CGCUCuugCCGCgUCaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 3229 0.67 0.608131
Target:  5'- gUGGGCGCGu---UGGCGUuGUUGGa -3'
miRNA:   3'- aACCCGCGCucuuGCCGCGuCAGCCg -5'
6879 3' -60.1 NC_001875.2 + 7437 0.7 0.444081
Target:  5'- -aGGGCaacugcgcgccgGCGAuuGCGGCGguGUaCGGCc -3'
miRNA:   3'- aaCCCG------------CGCUcuUGCCGCguCA-GCCG- -5'
6879 3' -60.1 NC_001875.2 + 9521 0.68 0.587995
Target:  5'- aUGGGCGCGGaAGCcGCGCccgauAGgacgCGGCu -3'
miRNA:   3'- aACCCGCGCUcUUGcCGCG-----UCa---GCCG- -5'
6879 3' -60.1 NC_001875.2 + 10142 0.68 0.57697
Target:  5'- -cGGGCGUGuuccgcaAGcGCGGCGUGGU-GGCc -3'
miRNA:   3'- aaCCCGCGC-------UCuUGCCGCGUCAgCCG- -5'
6879 3' -60.1 NC_001875.2 + 10440 0.66 0.698729
Target:  5'- --uGGCGCagcagcuuuGAcGCGGCGCGG-CGGCg -3'
miRNA:   3'- aacCCGCGcu-------CU-UGCCGCGUCaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 11993 0.71 0.409039
Target:  5'- gUUGGGCGCGGGugUGGUGgCgAGcgCGGCc -3'
miRNA:   3'- -AACCCGCGCUCuuGCCGC-G-UCa-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.