miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6879 3' -60.1 NC_001875.2 + 50016 0.7 0.462224
Target:  5'- -gGGGCGCGcguggucgccGGGCGGCgagGCGGcCGGCc -3'
miRNA:   3'- aaCCCGCGCu---------CUUGCCG---CGUCaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 72149 0.72 0.367748
Target:  5'- uUUGGGCcaaaCGAGuugucCGGCGCGGgcUCGGCu -3'
miRNA:   3'- -AACCCGc---GCUCuu---GCCGCGUC--AGCCG- -5'
6879 3' -60.1 NC_001875.2 + 33223 0.71 0.400552
Target:  5'- -cGGGCGCGGGcucGCcgGGCGCcguuUCGGCg -3'
miRNA:   3'- aaCCCGCGCUCu--UG--CCGCGuc--AGCCG- -5'
6879 3' -60.1 NC_001875.2 + 11993 0.71 0.409039
Target:  5'- gUUGGGCGCGGGugUGGUGgCgAGcgCGGCc -3'
miRNA:   3'- -AACCCGCGCUCuuGCCGC-G-UCa-GCCG- -5'
6879 3' -60.1 NC_001875.2 + 42745 0.7 0.426347
Target:  5'- -cGGcGaCGCGcaugguGAGCGGCGCgcucgGGUCGGCc -3'
miRNA:   3'- aaCC-C-GCGCu-----CUUGCCGCG-----UCAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 113588 0.7 0.426347
Target:  5'- aUUGGGC-C-AGcACGGCGUucgAGUCGGCg -3'
miRNA:   3'- -AACCCGcGcUCuUGCCGCG---UCAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 54593 0.7 0.435162
Target:  5'- -gGcGGCGCGcccACGGCGCGGuaUCGGUg -3'
miRNA:   3'- aaC-CCGCGCucuUGCCGCGUC--AGCCG- -5'
6879 3' -60.1 NC_001875.2 + 7437 0.7 0.444081
Target:  5'- -aGGGCaacugcgcgccgGCGAuuGCGGCGguGUaCGGCc -3'
miRNA:   3'- aaCCCG------------CGCUcuUGCCGCguCA-GCCG- -5'
6879 3' -60.1 NC_001875.2 + 122131 0.7 0.444081
Target:  5'- -cGGGCGCGGcgcGGcCGGCGCGcacGaCGGCg -3'
miRNA:   3'- aaCCCGCGCU---CUuGCCGCGU---CaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 72565 0.72 0.35984
Target:  5'- -cGGGCGCGGGcGCgGGCGCuG-CGGg -3'
miRNA:   3'- aaCCCGCGCUCuUG-CCGCGuCaGCCg -5'
6879 3' -60.1 NC_001875.2 + 12818 0.72 0.352052
Target:  5'- aUGGGgGU-AG-AUGGCGCGGUUGGCc -3'
miRNA:   3'- aACCCgCGcUCuUGCCGCGUCAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 122716 0.72 0.352052
Target:  5'- cUGGcGCGCGAGuccACGGCGUccgAGUucgUGGCg -3'
miRNA:   3'- aACC-CGCGCUCu--UGCCGCG---UCA---GCCG- -5'
6879 3' -60.1 NC_001875.2 + 37415 0.8 0.109529
Target:  5'- --cGGCGCGuGGAagaggccgUGGCGCAGUCGGCg -3'
miRNA:   3'- aacCCGCGCuCUU--------GCCGCGUCAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 69627 0.77 0.168976
Target:  5'- gUUGGcGCGCGAGGugGaCGCcGUCGGCc -3'
miRNA:   3'- -AACC-CGCGCUCUugCcGCGuCAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 80620 0.76 0.186661
Target:  5'- gUGGGCGCGcGGAACGcGCGCucgacgggCGGCg -3'
miRNA:   3'- aACCCGCGC-UCUUGC-CGCGuca-----GCCG- -5'
6879 3' -60.1 NC_001875.2 + 122792 0.75 0.216238
Target:  5'- --cGGCGCG-GAAacCGGCGCGGcCGGCg -3'
miRNA:   3'- aacCCGCGCuCUU--GCCGCGUCaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 67853 0.75 0.229152
Target:  5'- uUUGGGCGaCGGGGugcguCGccagauucugguucaGCGCGGUCGGCg -3'
miRNA:   3'- -AACCCGC-GCUCUu----GC---------------CGCGUCAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 37105 0.73 0.314924
Target:  5'- gUGGGUguGCGGGcGCGGCGCcgcGcCGGCg -3'
miRNA:   3'- aACCCG--CGCUCuUGCCGCGu--CaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 53914 0.73 0.322107
Target:  5'- gUGGGCGCGccguuGCgGGCGC-GUUGGCg -3'
miRNA:   3'- aACCCGCGCucu--UG-CCGCGuCAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 47022 0.72 0.352052
Target:  5'- cUUGGGCacCGAGGGCGGaGUGGUgGGCg -3'
miRNA:   3'- -AACCCGc-GCUCUUGCCgCGUCAgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.