miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6882 3' -61.7 NC_001875.2 + 16075 0.66 0.641233
Target:  5'- gGACgCACaCGG-CGcCGguuUCGGCGCACGc -3'
miRNA:   3'- gCUG-GUG-GCCgGCaGC---AGCCGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 33554 0.66 0.689846
Target:  5'- uGGCCACagugCGGUCGcCG-CGGgGCACc -3'
miRNA:   3'- gCUGGUG----GCCGGCaGCaGCCgCGUGc -5'
6882 3' -61.7 NC_001875.2 + 31040 0.66 0.641233
Target:  5'- cCGACCcgGCgCGGCCGUaCGUCGGacaacUGUGCc -3'
miRNA:   3'- -GCUGG--UG-GCCGGCA-GCAGCC-----GCGUGc -5'
6882 3' -61.7 NC_001875.2 + 13154 0.66 0.689846
Target:  5'- aCGACCACgCGGUaggCGUCGccgaacaCGGCGaGCGu -3'
miRNA:   3'- -GCUGGUG-GCCG---GCAGCa------GCCGCgUGC- -5'
6882 3' -61.7 NC_001875.2 + 7078 0.66 0.680181
Target:  5'- -cGCCACCGGCCuGUgCGcagacaugCaGCGCGCGc -3'
miRNA:   3'- gcUGGUGGCCGG-CA-GCa-------GcCGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 124723 0.66 0.660749
Target:  5'- aGGCaCGCguCGGCCGUuucgccgcCGUCGagccGCGCACGu -3'
miRNA:   3'- gCUG-GUG--GCCGGCA--------GCAGC----CGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 128776 0.66 0.680181
Target:  5'- gCGACC-CCGGCgCGcCG-CuGCGCGCc -3'
miRNA:   3'- -GCUGGuGGCCG-GCaGCaGcCGCGUGc -5'
6882 3' -61.7 NC_001875.2 + 52298 0.66 0.680181
Target:  5'- -uGCCGCUGGCCuuugCGcugUGGCGCAUa -3'
miRNA:   3'- gcUGGUGGCCGGca--GCa--GCCGCGUGc -5'
6882 3' -61.7 NC_001875.2 + 11803 0.66 0.641233
Target:  5'- -uGuuGCCGGCCG-CGUCGGUGUuuguggucGCGc -3'
miRNA:   3'- gcUggUGGCCGGCaGCAGCCGCG--------UGC- -5'
6882 3' -61.7 NC_001875.2 + 82938 0.66 0.680181
Target:  5'- aGuCCGucgucUCGGUCGUCG-CGGCGgGCGc -3'
miRNA:   3'- gCuGGU-----GGCCGGCAGCaGCCGCgUGC- -5'
6882 3' -61.7 NC_001875.2 + 1741 0.66 0.680181
Target:  5'- -cGCCGCCGccGCCGccauuucCGUCGGCGgAUGu -3'
miRNA:   3'- gcUGGUGGC--CGGCa------GCAGCCGCgUGC- -5'
6882 3' -61.7 NC_001875.2 + 103316 0.66 0.650998
Target:  5'- uGACCGgCGuGCCGggCGaCGcGUGCGCGa -3'
miRNA:   3'- gCUGGUgGC-CGGCa-GCaGC-CGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 36862 0.66 0.650998
Target:  5'- uGuACCGCaaaaGaaCGUCGUCGuGCGCGCGg -3'
miRNA:   3'- gC-UGGUGg---CcgGCAGCAGC-CGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 118985 0.66 0.641233
Target:  5'- aCGACCAaccaCGGCUG-CGUgcuagcCGGCGC-CGc -3'
miRNA:   3'- -GCUGGUg---GCCGGCaGCA------GCCGCGuGC- -5'
6882 3' -61.7 NC_001875.2 + 50765 0.66 0.689846
Target:  5'- uGAaCACgCGGCucuucuCGUCG-CGGCGCACc -3'
miRNA:   3'- gCUgGUG-GCCG------GCAGCaGCCGCGUGc -5'
6882 3' -61.7 NC_001875.2 + 66922 0.66 0.650998
Target:  5'- uGGCgCACaauGUCGUCGUCGcucuGCGCGCGc -3'
miRNA:   3'- gCUG-GUGgc-CGGCAGCAGC----CGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 6435 0.66 0.670479
Target:  5'- -cACCAUuugCGcGCCGUCGUaguaGCGCGCGg -3'
miRNA:   3'- gcUGGUG---GC-CGGCAGCAgc--CGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 42086 0.66 0.680181
Target:  5'- cCGACCACCauuuuGCCGaaacacUCGUaCGGCcgGCGCa -3'
miRNA:   3'- -GCUGGUGGc----CGGC------AGCA-GCCG--CGUGc -5'
6882 3' -61.7 NC_001875.2 + 63664 0.66 0.680181
Target:  5'- cCGuCCACCGuGUaauCGUCuugcgCGGCGCGCa -3'
miRNA:   3'- -GCuGGUGGC-CG---GCAGca---GCCGCGUGc -5'
6882 3' -61.7 NC_001875.2 + 1789 0.66 0.680181
Target:  5'- -cGCCGCCGccGCCGccauuucCGUCGGCGgAUGu -3'
miRNA:   3'- gcUGGUGGC--CGGCa------GCAGCCGCgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.