miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6882 3' -61.7 NC_001875.2 + 3814 1.07 0.001303
Target:  5'- uCGACCACCGGCCGUCGUCGGCGCACGc -3'
miRNA:   3'- -GCUGGUGGCCGGCAGCAGCCGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 93534 0.78 0.137084
Target:  5'- -uGCCGCCGGCC-UUGUCGGCGCuCGc -3'
miRNA:   3'- gcUGGUGGCCGGcAGCAGCCGCGuGC- -5'
6882 3' -61.7 NC_001875.2 + 101156 0.76 0.179198
Target:  5'- uCGACCACgUGGCCGUgCGcgUGGCGCugGu -3'
miRNA:   3'- -GCUGGUG-GCCGGCA-GCa-GCCGCGugC- -5'
6882 3' -61.7 NC_001875.2 + 86130 0.76 0.197169
Target:  5'- uGGCCAUCGGCaGUgCG-CGGCGCGCGc -3'
miRNA:   3'- gCUGGUGGCCGgCA-GCaGCCGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 117361 0.76 0.197169
Target:  5'- gGGCCgGCUGGCCGUCGgggaGGCGC-CGa -3'
miRNA:   3'- gCUGG-UGGCCGGCAGCag--CCGCGuGC- -5'
6882 3' -61.7 NC_001875.2 + 66115 0.76 0.201901
Target:  5'- cCGugUacaGCUGGCCGUCGUCGcGuCGCACa -3'
miRNA:   3'- -GCugG---UGGCCGGCAGCAGC-C-GCGUGc -5'
6882 3' -61.7 NC_001875.2 + 119893 0.76 0.201901
Target:  5'- aCGcGCCGCCGGUCGcgcgcacaGUCGGCGCGCc -3'
miRNA:   3'- -GC-UGGUGGCCGGCag------CAGCCGCGUGc -5'
6882 3' -61.7 NC_001875.2 + 5531 0.75 0.216693
Target:  5'- ---aCGCCGGCCGcCGUUgaGGCGCGCGu -3'
miRNA:   3'- gcugGUGGCCGGCaGCAG--CCGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 65760 0.75 0.218733
Target:  5'- gCGACCugaGCCGGCggcugggcgagcacgCGcgcggCGUCGGCGCGCGg -3'
miRNA:   3'- -GCUGG---UGGCCG---------------GCa----GCAGCCGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 36708 0.74 0.272789
Target:  5'- aGAUCGCCGGCCGU----GGCGCGCu -3'
miRNA:   3'- gCUGGUGGCCGGCAgcagCCGCGUGc -5'
6882 3' -61.7 NC_001875.2 + 6364 0.73 0.285319
Target:  5'- uCGGCCACgauGUCGUCGUCGGgcacCGCGCGg -3'
miRNA:   3'- -GCUGGUGgc-CGGCAGCAGCC----GCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 101637 0.73 0.291753
Target:  5'- -cGCCACaaCGGCCGUCG-CGGCGaACGg -3'
miRNA:   3'- gcUGGUG--GCCGGCAGCaGCCGCgUGC- -5'
6882 3' -61.7 NC_001875.2 + 54527 0.73 0.304959
Target:  5'- cCGGCCACC-GCCG-CGuacUCGGCGUACu -3'
miRNA:   3'- -GCUGGUGGcCGGCaGC---AGCCGCGUGc -5'
6882 3' -61.7 NC_001875.2 + 90020 0.72 0.318619
Target:  5'- gGACgcgcaACUGGCCGcggCGcCGGCGCGCGu -3'
miRNA:   3'- gCUGg----UGGCCGGCa--GCaGCCGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 88848 0.72 0.342884
Target:  5'- aGGCCACCuucgcaacGGCCGccgccuuucaaagcaUUGUUGGCGCGCu -3'
miRNA:   3'- gCUGGUGG--------CCGGC---------------AGCAGCCGCGUGc -5'
6882 3' -61.7 NC_001875.2 + 55101 0.72 0.347301
Target:  5'- aGAUCAUCGGC--UCGUCGGCGUccGCGu -3'
miRNA:   3'- gCUGGUGGCCGgcAGCAGCCGCG--UGC- -5'
6882 3' -61.7 NC_001875.2 + 42723 0.72 0.354755
Target:  5'- aGGCgCAcCCGGUCGUCGcgcgCGGCGaCGCGc -3'
miRNA:   3'- gCUG-GU-GGCCGGCAGCa---GCCGC-GUGC- -5'
6882 3' -61.7 NC_001875.2 + 4757 0.72 0.354755
Target:  5'- aGACUggaauGCUGGCCGcCGUUGGC-CGCGg -3'
miRNA:   3'- gCUGG-----UGGCCGGCaGCAGCCGcGUGC- -5'
6882 3' -61.7 NC_001875.2 + 33799 0.72 0.354755
Target:  5'- aGGCgCACUuGCC--CGUCGGCGCACGg -3'
miRNA:   3'- gCUG-GUGGcCGGcaGCAGCCGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 93556 0.71 0.369997
Target:  5'- -nGCCACCGcGUCGUCGUaCGcGCGCuGCGa -3'
miRNA:   3'- gcUGGUGGC-CGGCAGCA-GC-CGCG-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.