miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6882 3' -61.7 NC_001875.2 + 71907 0.69 0.488373
Target:  5'- cCGcCCACUGGgCGUgcgCGUCGGCGaGCGc -3'
miRNA:   3'- -GCuGGUGGCCgGCA---GCAGCCGCgUGC- -5'
6882 3' -61.7 NC_001875.2 + 129529 0.7 0.443901
Target:  5'- aGGCCgaGCUGGCCGagcugcgcgCGgccaCGGCGCGCGc -3'
miRNA:   3'- gCUGG--UGGCCGGCa--------GCa---GCCGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 79113 0.7 0.443901
Target:  5'- uGGCCACgGcGuuGUCGgCGGCGgGCGc -3'
miRNA:   3'- gCUGGUGgC-CggCAGCaGCCGCgUGC- -5'
6882 3' -61.7 NC_001875.2 + 119166 0.7 0.443901
Target:  5'- -cGCCAcacCCGGCCaaCG-CGGCGCGCGu -3'
miRNA:   3'- gcUGGU---GGCCGGcaGCaGCCGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 31696 0.7 0.452617
Target:  5'- gGACCGCCGcuuGCgCGcCGcCGGCGCAUu -3'
miRNA:   3'- gCUGGUGGC---CG-GCaGCaGCCGCGUGc -5'
6882 3' -61.7 NC_001875.2 + 41799 0.7 0.452617
Target:  5'- uGAuuuCCGCCGGCaCGcgCGcCGGCGcCGCGg -3'
miRNA:   3'- gCU---GGUGGCCG-GCa-GCaGCCGC-GUGC- -5'
6882 3' -61.7 NC_001875.2 + 107821 0.7 0.461425
Target:  5'- gCGACCGCCGaGcCCG-CGccCGGUGCGCc -3'
miRNA:   3'- -GCUGGUGGC-C-GGCaGCa-GCCGCGUGc -5'
6882 3' -61.7 NC_001875.2 + 68708 0.7 0.461425
Target:  5'- cCGugCGCCGGCCGcgCGccCGGC-CGCu -3'
miRNA:   3'- -GCugGUGGCCGGCa-GCa-GCCGcGUGc -5'
6882 3' -61.7 NC_001875.2 + 86715 0.69 0.478404
Target:  5'- -uGCCGcCCGGCCGacacugcUCGUCGcacaugaaggcGCGCACGu -3'
miRNA:   3'- gcUGGU-GGCCGGC-------AGCAGC-----------CGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 10865 0.7 0.410015
Target:  5'- aCGACgCGgUGGCCG-CGUCGGUgGCGCu -3'
miRNA:   3'- -GCUG-GUgGCCGGCaGCAGCCG-CGUGc -5'
6882 3' -61.7 NC_001875.2 + 97978 0.71 0.38568
Target:  5'- cCGuuCUGCCGGCCG-CGcaCGGUGCGCGa -3'
miRNA:   3'- -GCu-GGUGGCCGGCaGCa-GCCGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 27203 0.71 0.38568
Target:  5'- aCGcGCUaggAUCGGCC-UUGUCGGCGCACa -3'
miRNA:   3'- -GC-UGG---UGGCCGGcAGCAGCCGCGUGc -5'
6882 3' -61.7 NC_001875.2 + 117361 0.76 0.197169
Target:  5'- gGGCCgGCUGGCCGUCGgggaGGCGC-CGa -3'
miRNA:   3'- gCUGG-UGGCCGGCAGCag--CCGCGuGC- -5'
6882 3' -61.7 NC_001875.2 + 66115 0.76 0.201901
Target:  5'- cCGugUacaGCUGGCCGUCGUCGcGuCGCACa -3'
miRNA:   3'- -GCugG---UGGCCGGCAGCAGC-C-GCGUGc -5'
6882 3' -61.7 NC_001875.2 + 36708 0.74 0.272789
Target:  5'- aGAUCGCCGGCCGU----GGCGCGCu -3'
miRNA:   3'- gCUGGUGGCCGGCAgcagCCGCGUGc -5'
6882 3' -61.7 NC_001875.2 + 6364 0.73 0.285319
Target:  5'- uCGGCCACgauGUCGUCGUCGGgcacCGCGCGg -3'
miRNA:   3'- -GCUGGUGgc-CGGCAGCAGCC----GCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 54527 0.73 0.304959
Target:  5'- cCGGCCACC-GCCG-CGuacUCGGCGUACu -3'
miRNA:   3'- -GCUGGUGGcCGGCaGC---AGCCGCGUGc -5'
6882 3' -61.7 NC_001875.2 + 4757 0.72 0.354755
Target:  5'- aGACUggaauGCUGGCCGcCGUUGGC-CGCGg -3'
miRNA:   3'- gCUGG-----UGGCCGGCaGCAGCCGcGUGC- -5'
6882 3' -61.7 NC_001875.2 + 42723 0.72 0.354755
Target:  5'- aGGCgCAcCCGGUCGUCGcgcgCGGCGaCGCGc -3'
miRNA:   3'- gCUG-GU-GGCCGGCAGCa---GCCGC-GUGC- -5'
6882 3' -61.7 NC_001875.2 + 29268 0.71 0.377784
Target:  5'- gCGGCCGCCGaCCG-CGcCGGCgggGCGCGg -3'
miRNA:   3'- -GCUGGUGGCcGGCaGCaGCCG---CGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.