miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6882 3' -61.7 NC_001875.2 + 1741 0.66 0.680181
Target:  5'- -cGCCGCCGccGCCGccauuucCGUCGGCGgAUGu -3'
miRNA:   3'- gcUGGUGGC--CGGCa------GCAGCCGCgUGC- -5'
6882 3' -61.7 NC_001875.2 + 1789 0.66 0.680181
Target:  5'- -cGCCGCCGccGCCGccauuucCGUCGGCGgAUGu -3'
miRNA:   3'- gcUGGUGGC--CGGCa------GCAGCCGCgUGC- -5'
6882 3' -61.7 NC_001875.2 + 3814 1.07 0.001303
Target:  5'- uCGACCACCGGCCGUCGUCGGCGCACGc -3'
miRNA:   3'- -GCUGGUGGCCGGCAGCAGCCGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 4757 0.72 0.354755
Target:  5'- aGACUggaauGCUGGCCGcCGUUGGC-CGCGg -3'
miRNA:   3'- gCUGG-----UGGCCGGCaGCAGCCGcGUGC- -5'
6882 3' -61.7 NC_001875.2 + 5531 0.75 0.216693
Target:  5'- ---aCGCCGGCCGcCGUUgaGGCGCGCGu -3'
miRNA:   3'- gcugGUGGCCGGCaGCAG--CCGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 6364 0.73 0.285319
Target:  5'- uCGGCCACgauGUCGUCGUCGGgcacCGCGCGg -3'
miRNA:   3'- -GCUGGUGgc-CGGCAGCAGCC----GCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 6435 0.66 0.670479
Target:  5'- -cACCAUuugCGcGCCGUCGUaguaGCGCGCGg -3'
miRNA:   3'- gcUGGUG---GC-CGGCAGCAgc--CGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 6915 0.66 0.680181
Target:  5'- aCGugCGCuCGGCCGagggCGUgGaccGCGCGCu -3'
miRNA:   3'- -GCugGUG-GCCGGCa---GCAgC---CGCGUGc -5'
6882 3' -61.7 NC_001875.2 + 7078 0.66 0.680181
Target:  5'- -cGCCACCGGCCuGUgCGcagacaugCaGCGCGCGc -3'
miRNA:   3'- gcUGGUGGCCGG-CA-GCa-------GcCGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 9044 0.7 0.426758
Target:  5'- -aGCCGCCGGCCG-CGcCGGUuuccGCGCc -3'
miRNA:   3'- gcUGGUGGCCGGCaGCaGCCG----CGUGc -5'
6882 3' -61.7 NC_001875.2 + 10865 0.7 0.410015
Target:  5'- aCGACgCGgUGGCCG-CGUCGGUgGCGCu -3'
miRNA:   3'- -GCUG-GUgGCCGGCaGCAGCCG-CGUGc -5'
6882 3' -61.7 NC_001875.2 + 11152 0.69 0.470322
Target:  5'- aCGAUgGaCGGCCgGUCGaUGGCGCACa -3'
miRNA:   3'- -GCUGgUgGCCGG-CAGCaGCCGCGUGc -5'
6882 3' -61.7 NC_001875.2 + 11803 0.66 0.641233
Target:  5'- -uGuuGCCGGCCG-CGUCGGUGUuuguggucGCGc -3'
miRNA:   3'- gcUggUGGCCGGCaGCAGCCGCG--------UGC- -5'
6882 3' -61.7 NC_001875.2 + 11957 0.68 0.562482
Target:  5'- gCGACCGgCGGCgCGUugcaaagcacuggCGaCGGCGUugGg -3'
miRNA:   3'- -GCUGGUgGCCG-GCA-------------GCaGCCGCGugC- -5'
6882 3' -61.7 NC_001875.2 + 13154 0.66 0.689846
Target:  5'- aCGACCACgCGGUaggCGUCGccgaacaCGGCGaGCGu -3'
miRNA:   3'- -GCUGGUG-GCCG---GCAGCa------GCCGCgUGC- -5'
6882 3' -61.7 NC_001875.2 + 13533 0.71 0.38568
Target:  5'- -cGCgGCCGGCCGccucgacccUGUCGGCGUACa -3'
miRNA:   3'- gcUGgUGGCCGGCa--------GCAGCCGCGUGc -5'
6882 3' -61.7 NC_001875.2 + 16075 0.66 0.641233
Target:  5'- gGACgCACaCGG-CGcCGguuUCGGCGCACGc -3'
miRNA:   3'- gCUG-GUG-GCCgGCaGC---AGCCGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 17821 0.71 0.393685
Target:  5'- gGACCGCgCGGCCGccaugcgCGagGGCGC-CGa -3'
miRNA:   3'- gCUGGUG-GCCGGCa------GCagCCGCGuGC- -5'
6882 3' -61.7 NC_001875.2 + 20057 0.7 0.464973
Target:  5'- gCGugCACC-GCCGUcaCcagcgacaccagucgGUCGGCGCACGu -3'
miRNA:   3'- -GCugGUGGcCGGCA--G---------------CAGCCGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 21166 0.7 0.46054
Target:  5'- gCGGCCGCuucuuuuCGGCaaaaauCGUCGUCGcGCgGCACGg -3'
miRNA:   3'- -GCUGGUG-------GCCG------GCAGCAGC-CG-CGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.