miRNA display CGI


Results 1 - 20 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6883 3' -59.6 NC_001875.2 + 7106 0.66 0.693384
Target:  5'- cGCGcGCUGGCcgacauugaccgccaCGCGCCGCUugccaGGCGCg -3'
miRNA:   3'- -CGUaCGACUGc--------------GCGCGGCGG-----UCGUGa -5'
6883 3' -59.6 NC_001875.2 + 119524 0.66 0.722208
Target:  5'- ---cGCUGGCcggGCGCGuuGaCCAcGCACa -3'
miRNA:   3'- cguaCGACUG---CGCGCggC-GGU-CGUGa -5'
6883 3' -59.6 NC_001875.2 + 89292 0.66 0.702385
Target:  5'- aGgGUGUaGugGCcgcaugGCGCCGCCAccauGCGCUu -3'
miRNA:   3'- -CgUACGaCugCG------CGCGGCGGU----CGUGA- -5'
6883 3' -59.6 NC_001875.2 + 69222 0.66 0.69939
Target:  5'- cGCuUGUUcgggcGACGCGCGCUGUgccgacuugcccgaCGGCACg -3'
miRNA:   3'- -CGuACGA-----CUGCGCGCGGCG--------------GUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 128653 0.66 0.692381
Target:  5'- cGCAaccUGUcucUGGUGCGCgGCCGCCGGCuCa -3'
miRNA:   3'- -CGU---ACG---ACUGCGCG-CGGCGGUCGuGa -5'
6883 3' -59.6 NC_001875.2 + 49582 0.66 0.682328
Target:  5'- aGCA-GCU---GCGCGCCGaCgAGCGCUa -3'
miRNA:   3'- -CGUaCGAcugCGCGCGGC-GgUCGUGA- -5'
6883 3' -59.6 NC_001875.2 + 95544 0.66 0.682328
Target:  5'- cGCAUucgaucGCUGAgcccggagccUGCGCGuCCGCCAaaauguugguuGCGCUg -3'
miRNA:   3'- -CGUA------CGACU----------GCGCGC-GGCGGU-----------CGUGA- -5'
6883 3' -59.6 NC_001875.2 + 83012 0.66 0.682328
Target:  5'- gGCGUcaGCUGGacCGCGCGCaGCgAGUGCg -3'
miRNA:   3'- -CGUA--CGACU--GCGCGCGgCGgUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 117389 0.66 0.692381
Target:  5'- aGCuUGCUGGcCGCGgGCUucuuuGCCAGCu-- -3'
miRNA:   3'- -CGuACGACU-GCGCgCGG-----CGGUCGuga -5'
6883 3' -59.6 NC_001875.2 + 121984 0.66 0.692381
Target:  5'- ---aGCUGGCGgGCacguugcCCGCCAGCGa- -3'
miRNA:   3'- cguaCGACUGCgCGc------GGCGGUCGUga -5'
6883 3' -59.6 NC_001875.2 + 29793 0.66 0.672233
Target:  5'- uGCggGaCUGuGCGgGCGCUGgCGGCGCa -3'
miRNA:   3'- -CGuaC-GAC-UGCgCGCGGCgGUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 71126 0.66 0.682328
Target:  5'- --uUGCUGugGCuGgGCgGCCucAGCGCg -3'
miRNA:   3'- cguACGACugCG-CgCGgCGG--UCGUGa -5'
6883 3' -59.6 NC_001875.2 + 51937 0.66 0.680312
Target:  5'- aGCGUGCggcgcuacuuugGGCGCGacguGCCGCaCGcGCGCg -3'
miRNA:   3'- -CGUACGa-----------CUGCGCg---CGGCG-GU-CGUGa -5'
6883 3' -59.6 NC_001875.2 + 26892 0.66 0.692381
Target:  5'- aUAUGUUGggcguuACGCGCGCguucUGCUGGCGCa -3'
miRNA:   3'- cGUACGAC------UGCGCGCG----GCGGUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 63 0.66 0.672233
Target:  5'- gGCGgcgGCgaacgacaccaaUGACGCGCcgcccgauccGCCGCCGGCcCa -3'
miRNA:   3'- -CGUa--CG------------ACUGCGCG----------CGGCGGUCGuGa -5'
6883 3' -59.6 NC_001875.2 + 5133 0.66 0.692381
Target:  5'- cGUccGCgGACGUGCGCCGCUucggguuuuugAGcCGCa -3'
miRNA:   3'- -CGuaCGaCUGCGCGCGGCGG-----------UC-GUGa -5'
6883 3' -59.6 NC_001875.2 + 74349 0.66 0.682328
Target:  5'- aGUggGCUuucaaacuagacGGCGUGCGCgGCCgcGGCGCg -3'
miRNA:   3'- -CGuaCGA------------CUGCGCGCGgCGG--UCGUGa -5'
6883 3' -59.6 NC_001875.2 + 29252 0.66 0.702385
Target:  5'- gGCAuacUGCgGGUGCGCgGCCGCCGaccGCGCc -3'
miRNA:   3'- -CGU---ACGaCUGCGCG-CGGCGGU---CGUGa -5'
6883 3' -59.6 NC_001875.2 + 70226 0.66 0.702385
Target:  5'- gGCGccGCcGACacaGCccgaaGCGCCGCCGGCGCc -3'
miRNA:   3'- -CGUa-CGaCUG---CG-----CGCGGCGGUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 272 0.66 0.69939
Target:  5'- uGUAuUGCUGGCGU-CGCCGCaugcuggccaggucCAGCACc -3'
miRNA:   3'- -CGU-ACGACUGCGcGCGGCG--------------GUCGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.