miRNA display CGI


Results 1 - 20 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6883 3' -59.6 NC_001875.2 + 63 0.66 0.672233
Target:  5'- gGCGgcgGCgaacgacaccaaUGACGCGCcgcccgauccGCCGCCGGCcCa -3'
miRNA:   3'- -CGUa--CG------------ACUGCGCG----------CGGCGGUCGuGa -5'
6883 3' -59.6 NC_001875.2 + 272 0.66 0.69939
Target:  5'- uGUAuUGCUGGCGU-CGCCGCaugcuggccaggucCAGCACc -3'
miRNA:   3'- -CGU-ACGACUGCGcGCGGCG--------------GUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 1782 0.67 0.662107
Target:  5'- aGCAUGCcGcCGC-CGCCGCCGcCAUUu -3'
miRNA:   3'- -CGUACGaCuGCGcGCGGCGGUcGUGA- -5'
6883 3' -59.6 NC_001875.2 + 1869 0.68 0.591001
Target:  5'- aGCAUGCcGcCGC-CGCCGCCGcCGCc -3'
miRNA:   3'- -CGUACGaCuGCGcGCGGCGGUcGUGa -5'
6883 3' -59.6 NC_001875.2 + 2277 0.69 0.492378
Target:  5'- cCAUGUUGacgucgugaugcGCGCGCGCCgugGCCGcGCGCa -3'
miRNA:   3'- cGUACGAC------------UGCGCGCGG---CGGU-CGUGa -5'
6883 3' -59.6 NC_001875.2 + 2944 0.69 0.511581
Target:  5'- cGCGcGCUGGCGCGCuuGCuCGgCAGCGgUg -3'
miRNA:   3'- -CGUaCGACUGCGCG--CG-GCgGUCGUgA- -5'
6883 3' -59.6 NC_001875.2 + 3004 0.69 0.521298
Target:  5'- gGCggGUUGAagUGCGCGUCGCCGuGCAa- -3'
miRNA:   3'- -CGuaCGACU--GCGCGCGGCGGU-CGUga -5'
6883 3' -59.6 NC_001875.2 + 4431 1.08 0.001138
Target:  5'- gGCAUGCUGACGCGCGCCGCCAGCACUu -3'
miRNA:   3'- -CGUACGACUGCGCGCGGCGGUCGUGA- -5'
6883 3' -59.6 NC_001875.2 + 4535 0.66 0.726138
Target:  5'- cGCcgGCUGcgguuccugcgguuUGgGgGCCGCCAGCAa- -3'
miRNA:   3'- -CGuaCGACu-------------GCgCgCGGCGGUCGUga -5'
6883 3' -59.6 NC_001875.2 + 5133 0.66 0.692381
Target:  5'- cGUccGCgGACGUGCGCCGCUucggguuuuugAGcCGCa -3'
miRNA:   3'- -CGuaCGaCUGCGCGCGGCGG-----------UC-GUGa -5'
6883 3' -59.6 NC_001875.2 + 6944 0.66 0.722208
Target:  5'- cGCGUcGU--GCGUGCGCCGCgacaucgccaCGGCGCg -3'
miRNA:   3'- -CGUA-CGacUGCGCGCGGCG----------GUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 7014 0.68 0.598087
Target:  5'- gGCcgGC-GGCGCguaucugaccuuuaGCGCCGCCA-CGCUg -3'
miRNA:   3'- -CGuaCGaCUGCG--------------CGCGGCGGUcGUGA- -5'
6883 3' -59.6 NC_001875.2 + 7106 0.66 0.693384
Target:  5'- cGCGcGCUGGCcgacauugaccgccaCGCGCCGCUugccaGGCGCg -3'
miRNA:   3'- -CGUaCGACUGc--------------GCGCGGCGG-----UCGUGa -5'
6883 3' -59.6 NC_001875.2 + 9375 0.73 0.32291
Target:  5'- -gGUGCUG-CGCGCGCCG-CAGCcaACUu -3'
miRNA:   3'- cgUACGACuGCGCGCGGCgGUCG--UGA- -5'
6883 3' -59.6 NC_001875.2 + 9607 0.7 0.455022
Target:  5'- cGCGUGCaacGACGCGUuugugcuaaGCUGCguGCGCg -3'
miRNA:   3'- -CGUACGa--CUGCGCG---------CGGCGguCGUGa -5'
6883 3' -59.6 NC_001875.2 + 11071 0.69 0.492378
Target:  5'- aGCAguuugGCgUGGCGCGCGCC-CUGGaCACg -3'
miRNA:   3'- -CGUa----CG-ACUGCGCGCGGcGGUC-GUGa -5'
6883 3' -59.6 NC_001875.2 + 11941 0.67 0.631616
Target:  5'- cGCGccGaCUGuGCGCGCGaCCGgCGGCGCg -3'
miRNA:   3'- -CGUa-C-GAC-UGCGCGC-GGCgGUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 12661 0.75 0.246425
Target:  5'- uGCuguUGUUGACGCGCGCCGCguuggccggguguggCGGCAa- -3'
miRNA:   3'- -CGu--ACGACUGCGCGCGGCG---------------GUCGUga -5'
6883 3' -59.6 NC_001875.2 + 13798 0.7 0.445923
Target:  5'- uCGUGCgggUGGCGCgGCGuuGCCGucGCACUg -3'
miRNA:   3'- cGUACG---ACUGCG-CGCggCGGU--CGUGA- -5'
6883 3' -59.6 NC_001875.2 + 13906 0.66 0.722208
Target:  5'- ---cGC-GGCgGCGCGCaCGCCGGC-CUg -3'
miRNA:   3'- cguaCGaCUG-CGCGCG-GCGGUCGuGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.