miRNA display CGI


Results 1 - 20 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6883 3' -59.6 NC_001875.2 + 81293 0.71 0.39357
Target:  5'- cGCAaaagacACGCGCGCCGCCGGCGg- -3'
miRNA:   3'- -CGUacgac-UGCGCGCGGCGGUCGUga -5'
6883 3' -59.6 NC_001875.2 + 98746 0.72 0.355446
Target:  5'- uGCGUGCUcagccgcGACG-GCGCCGCCAucaaagucuggagccGCGCg -3'
miRNA:   3'- -CGUACGA-------CUGCgCGCGGCGGU---------------CGUGa -5'
6883 3' -59.6 NC_001875.2 + 129149 0.72 0.358588
Target:  5'- -gAUGCUGgagucugccgagGCGCcgcaguugccccagGCGCCGCCGGCGCc -3'
miRNA:   3'- cgUACGAC------------UGCG--------------CGCGGCGGUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 97871 0.72 0.360957
Target:  5'- uGCcgGUcGGCuGCGCGCCGCacgGGCACg -3'
miRNA:   3'- -CGuaCGaCUG-CGCGCGGCGg--UCGUGa -5'
6883 3' -59.6 NC_001875.2 + 74115 0.72 0.360957
Target:  5'- cCGUGCUGGCGCGUGuUCGCCuAGaGCUg -3'
miRNA:   3'- cGUACGACUGCGCGC-GGCGG-UCgUGA- -5'
6883 3' -59.6 NC_001875.2 + 54743 0.72 0.368128
Target:  5'- cCGUGCgGGCGCaccgccgGCaCCGCCAGCGCa -3'
miRNA:   3'- cGUACGaCUGCG-------CGcGGCGGUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 37108 0.72 0.368931
Target:  5'- gGUGUGCgGGCGCgGCGCCgcGCCGGCGu- -3'
miRNA:   3'- -CGUACGaCUGCG-CGCGG--CGGUCGUga -5'
6883 3' -59.6 NC_001875.2 + 39321 0.72 0.377026
Target:  5'- uGCcgGCggcguGCGCGCGCUGCaGGCGCa -3'
miRNA:   3'- -CGuaCGac---UGCGCGCGGCGgUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 91611 0.71 0.39357
Target:  5'- aGCAcGCUaaacACGCGCGUuuCGCCGGCGCc -3'
miRNA:   3'- -CGUaCGAc---UGCGCGCG--GCGGUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 49858 0.73 0.330274
Target:  5'- cGCcgGCcGGCGCGCcUUGCCGGCGCc -3'
miRNA:   3'- -CGuaCGaCUGCGCGcGGCGGUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 30451 0.73 0.301557
Target:  5'- cGCA-GCUGGCGCGCGuuGC--GCGCg -3'
miRNA:   3'- -CGUaCGACUGCGCGCggCGguCGUGa -5'
6883 3' -59.6 NC_001875.2 + 122118 0.73 0.294685
Target:  5'- aCGUGCcacgcuucgGGCGCgGCGCgGCCGGCGCg -3'
miRNA:   3'- cGUACGa--------CUGCG-CGCGgCGGUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 31683 0.84 0.058821
Target:  5'- aGCGUGCcGGCguggaccgccgcuuGCGCGCCGCCGGCGCa -3'
miRNA:   3'- -CGUACGaCUG--------------CGCGCGGCGGUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 16848 0.77 0.173024
Target:  5'- aGCAUGCguaGcCGUguuaaucgGCGCCGCCAGCGCg -3'
miRNA:   3'- -CGUACGa--CuGCG--------CGCGGCGGUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 17326 0.77 0.186505
Target:  5'- aGC-UGCUGGCGguUGCGCCGCC-GCGCg -3'
miRNA:   3'- -CGuACGACUGC--GCGCGGCGGuCGUGa -5'
6883 3' -59.6 NC_001875.2 + 108578 0.76 0.195999
Target:  5'- -gGUGCUGGCGCuGCGCUGCCcGuCGCUg -3'
miRNA:   3'- cgUACGACUGCG-CGCGGCGGuC-GUGA- -5'
6883 3' -59.6 NC_001875.2 + 20652 0.76 0.216258
Target:  5'- ------cGGCGCGCGCCGCCcAGCGCg -3'
miRNA:   3'- cguacgaCUGCGCGCGGCGG-UCGUGa -5'
6883 3' -59.6 NC_001875.2 + 88240 0.75 0.232607
Target:  5'- cGCAaGC-GGCGCGCGCCGCCGcugccgccGUACUc -3'
miRNA:   3'- -CGUaCGaCUGCGCGCGGCGGU--------CGUGA- -5'
6883 3' -59.6 NC_001875.2 + 118460 0.75 0.249984
Target:  5'- cGCGUGCUG-CGuCGCGCUguggaaaacgGCUAGCACg -3'
miRNA:   3'- -CGUACGACuGC-GCGCGG----------CGGUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 40785 0.74 0.274804
Target:  5'- gGCGUGCUG-CGCGUGCC--CAGCACc -3'
miRNA:   3'- -CGUACGACuGCGCGCGGcgGUCGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.