miRNA display CGI


Results 1 - 20 of 268 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6883 3' -59.6 NC_001875.2 + 4431 1.08 0.001138
Target:  5'- gGCAUGCUGACGCGCGCCGCCAGCACUu -3'
miRNA:   3'- -CGUACGACUGCGCGCGGCGGUCGUGA- -5'
6883 3' -59.6 NC_001875.2 + 31683 0.84 0.058821
Target:  5'- aGCGUGCcGGCguggaccgccgcuuGCGCGCCGCCGGCGCa -3'
miRNA:   3'- -CGUACGaCUG--------------CGCGCGGCGGUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 102027 0.8 0.114892
Target:  5'- aGCGUGCcguUGACccaUGCGCCGCCAGCGCc -3'
miRNA:   3'- -CGUACG---ACUGc--GCGCGGCGGUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 50494 0.79 0.127439
Target:  5'- cGCGUGCgcgcGGCaccaGCGCGCCGCgCGGCACg -3'
miRNA:   3'- -CGUACGa---CUG----CGCGCGGCG-GUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 19979 0.79 0.141244
Target:  5'- cGCcguUGCUGACGUGCGUgGCCAGaCACc -3'
miRNA:   3'- -CGu--ACGACUGCGCGCGgCGGUC-GUGa -5'
6883 3' -59.6 NC_001875.2 + 33969 0.78 0.148648
Target:  5'- cCGUGC-GGCGCGCaGCCGaCCGGCACg -3'
miRNA:   3'- cGUACGaCUGCGCG-CGGC-GGUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 36494 0.78 0.160419
Target:  5'- cGCGUGC--ACGUGCGCCGCCGGuUACg -3'
miRNA:   3'- -CGUACGacUGCGCGCGGCGGUC-GUGa -5'
6883 3' -59.6 NC_001875.2 + 43600 0.78 0.164526
Target:  5'- gGCAgcgGC-GGCGCGCGCCGCUuGCGCc -3'
miRNA:   3'- -CGUa--CGaCUGCGCGCGGCGGuCGUGa -5'
6883 3' -59.6 NC_001875.2 + 16848 0.77 0.173024
Target:  5'- aGCAUGCguaGcCGUguuaaucgGCGCCGCCAGCGCg -3'
miRNA:   3'- -CGUACGa--CuGCG--------CGCGGCGGUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 92505 0.77 0.181911
Target:  5'- aGCGUcagGCUGcgccugcagcGCGCGCacGCCGCCGGCACg -3'
miRNA:   3'- -CGUA---CGAC----------UGCGCG--CGGCGGUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 17326 0.77 0.186505
Target:  5'- aGC-UGCUGGCGguUGCGCCGCC-GCGCg -3'
miRNA:   3'- -CGuACGACUGC--GCGCGGCGGuCGUGa -5'
6883 3' -59.6 NC_001875.2 + 108578 0.76 0.195999
Target:  5'- -gGUGCUGGCGCuGCGCUGCCcGuCGCUg -3'
miRNA:   3'- cgUACGACUGCG-CGCGGCGGuC-GUGA- -5'
6883 3' -59.6 NC_001875.2 + 17806 0.76 0.195999
Target:  5'- cGCGUGCUaccaucugGAcCGCGCgGCCGCCAuGCGCg -3'
miRNA:   3'- -CGUACGA--------CU-GCGCG-CGGCGGU-CGUGa -5'
6883 3' -59.6 NC_001875.2 + 89616 0.76 0.195999
Target:  5'- cGCGUGCacauUGAcaagcaccaCGCGUGCCGCCGcGCGCUa -3'
miRNA:   3'- -CGUACG----ACU---------GCGCGCGGCGGU-CGUGA- -5'
6883 3' -59.6 NC_001875.2 + 78401 0.76 0.216258
Target:  5'- cGCAgUGCUGcACGCGCugGCCGUguGCGCg -3'
miRNA:   3'- -CGU-ACGAC-UGCGCG--CGGCGguCGUGa -5'
6883 3' -59.6 NC_001875.2 + 20652 0.76 0.216258
Target:  5'- ------cGGCGCGCGCCGCCcAGCGCg -3'
miRNA:   3'- cguacgaCUGCGCGCGGCGG-UCGUGa -5'
6883 3' -59.6 NC_001875.2 + 18764 0.76 0.216258
Target:  5'- ---cGCUGACGCGCGUCGCCAuCAa- -3'
miRNA:   3'- cguaCGACUGCGCGCGGCGGUcGUga -5'
6883 3' -59.6 NC_001875.2 + 127408 0.75 0.227045
Target:  5'- -aGUGCUGGCG-GCGCgCGUCAGCAUg -3'
miRNA:   3'- cgUACGACUGCgCGCG-GCGGUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 88240 0.75 0.232607
Target:  5'- cGCAaGC-GGCGCGCGCCGCCGcugccgccGUACUc -3'
miRNA:   3'- -CGUaCGaCUGCGCGCGGCGGU--------CGUGA- -5'
6883 3' -59.6 NC_001875.2 + 127555 0.75 0.244076
Target:  5'- cGCGUGCuUGAUcgGCGCGCUGCU-GCACUu -3'
miRNA:   3'- -CGUACG-ACUG--CGCGCGGCGGuCGUGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.