miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6883 5' -56.1 NC_001875.2 + 81447 0.66 0.872661
Target:  5'- --uGCGCCGUCCGCaaaaaguacacgcugGUccGCggUCAGu -3'
miRNA:   3'- acuCGCGGCAGGCG---------------CGuaCGaaAGUC- -5'
6883 5' -56.1 NC_001875.2 + 17304 0.66 0.862059
Target:  5'- gUGAGCGCCG-CCGauguuaaagaGC-UGCUggCGGu -3'
miRNA:   3'- -ACUCGCGGCaGGCg---------CGuACGAaaGUC- -5'
6883 5' -56.1 NC_001875.2 + 37593 0.66 0.862059
Target:  5'- cGAGCGCCGcggccggCCGCacggcgGCGUGCUc---- -3'
miRNA:   3'- aCUCGCGGCa------GGCG------CGUACGAaaguc -5'
6883 5' -56.1 NC_001875.2 + 54462 0.66 0.854229
Target:  5'- -cGGCGCCG-CacaGCGUGUGCgg-CAGg -3'
miRNA:   3'- acUCGCGGCaGg--CGCGUACGaaaGUC- -5'
6883 5' -56.1 NC_001875.2 + 71931 0.66 0.84619
Target:  5'- cGAGCGCCuugaCCGCGCGcuccGCgcgCAGc -3'
miRNA:   3'- aCUCGCGGca--GGCGCGUa---CGaaaGUC- -5'
6883 5' -56.1 NC_001875.2 + 57471 0.66 0.84619
Target:  5'- cUGAacGCGCCGcggCCGCGCAcGCcgUCu- -3'
miRNA:   3'- -ACU--CGCGGCa--GGCGCGUaCGaaAGuc -5'
6883 5' -56.1 NC_001875.2 + 40222 0.66 0.84619
Target:  5'- -uGGCGCCGgcgaaaCGCGCGUGUUUa--- -3'
miRNA:   3'- acUCGCGGCag----GCGCGUACGAAaguc -5'
6883 5' -56.1 NC_001875.2 + 17339 0.67 0.837951
Target:  5'- --uGCGCCG-CCGCGCGaccGCg-UCAGa -3'
miRNA:   3'- acuCGCGGCaGGCGCGUa--CGaaAGUC- -5'
6883 5' -56.1 NC_001875.2 + 57556 0.67 0.837951
Target:  5'- cGAuGCGCUGUUCGCGCGUaaaccgGCg--CGGc -3'
miRNA:   3'- aCU-CGCGGCAGGCGCGUA------CGaaaGUC- -5'
6883 5' -56.1 NC_001875.2 + 66057 0.67 0.829519
Target:  5'- cGcGCGCCGacgCCGCGCgcGUGCUcgccCAGc -3'
miRNA:   3'- aCuCGCGGCa--GGCGCG--UACGAaa--GUC- -5'
6883 5' -56.1 NC_001875.2 + 72710 0.67 0.820902
Target:  5'- gUGcGCGCCGUUaauUGCGCuUGCgcgUCGGc -3'
miRNA:   3'- -ACuCGCGGCAG---GCGCGuACGaa-AGUC- -5'
6883 5' -56.1 NC_001875.2 + 98451 0.67 0.820902
Target:  5'- cGAGCGCUa-CCGCGCAaUGCUg---- -3'
miRNA:   3'- aCUCGCGGcaGGCGCGU-ACGAaaguc -5'
6883 5' -56.1 NC_001875.2 + 59212 0.67 0.820902
Target:  5'- --cGCGCCGUuuG-GCGUGCcg-CAGg -3'
miRNA:   3'- acuCGCGGCAggCgCGUACGaaaGUC- -5'
6883 5' -56.1 NC_001875.2 + 29805 0.67 0.820902
Target:  5'- cGGGCGCUGgCgGCGCAUGgg-UCAa -3'
miRNA:   3'- aCUCGCGGCaGgCGCGUACgaaAGUc -5'
6883 5' -56.1 NC_001875.2 + 85275 0.67 0.812107
Target:  5'- cGAGCGCCccgaacacgGUuuGCGCggGCggcgCGGg -3'
miRNA:   3'- aCUCGCGG---------CAggCGCGuaCGaaa-GUC- -5'
6883 5' -56.1 NC_001875.2 + 64372 0.67 0.812107
Target:  5'- aGAGCaucCUGUgCCgGCGCGUcaGCUUUCAGa -3'
miRNA:   3'- aCUCGc--GGCA-GG-CGCGUA--CGAAAGUC- -5'
6883 5' -56.1 NC_001875.2 + 8072 0.67 0.812107
Target:  5'- uUGAGCG-CGUCCGCGU-UGUUgUCGc -3'
miRNA:   3'- -ACUCGCgGCAGGCGCGuACGAaAGUc -5'
6883 5' -56.1 NC_001875.2 + 65258 0.67 0.812107
Target:  5'- aGAG-GCCGUCaaguCGCGCA-GCUUUguGc -3'
miRNA:   3'- aCUCgCGGCAG----GCGCGUaCGAAAguC- -5'
6883 5' -56.1 NC_001875.2 + 65422 0.67 0.803143
Target:  5'- -uGGCGCCGauaUCCGCGUcgGCggacaucUUCAa -3'
miRNA:   3'- acUCGCGGC---AGGCGCGuaCGa------AAGUc -5'
6883 5' -56.1 NC_001875.2 + 98034 0.67 0.802238
Target:  5'- cGAGCGCCGaaCGCguguucgGCAUGCUgaUCGa -3'
miRNA:   3'- aCUCGCGGCagGCG-------CGUACGAa-AGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.