miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6883 5' -56.1 NC_001875.2 + 124201 0.7 0.654779
Target:  5'- aGAGCG-CGUCgGCGUGUGUgcgCAGg -3'
miRNA:   3'- aCUCGCgGCAGgCGCGUACGaaaGUC- -5'
6883 5' -56.1 NC_001875.2 + 99994 0.71 0.571856
Target:  5'- gGAGCGCUGUuaGCGCgGUGCUggUCGc -3'
miRNA:   3'- aCUCGCGGCAggCGCG-UACGAa-AGUc -5'
6883 5' -56.1 NC_001875.2 + 98925 0.69 0.689904
Target:  5'- -cGGCGCCGgUUGCGCGUGCgcgacgcgcgcgugUUCAGc -3'
miRNA:   3'- acUCGCGGCaGGCGCGUACGa-------------AAGUC- -5'
6883 5' -56.1 NC_001875.2 + 98451 0.67 0.820902
Target:  5'- cGAGCGCUa-CCGCGCAaUGCUg---- -3'
miRNA:   3'- aCUCGCGGcaGGCGCGU-ACGAaaguc -5'
6883 5' -56.1 NC_001875.2 + 98034 0.67 0.802238
Target:  5'- cGAGCGCCGaaCGCguguucgGCAUGCUgaUCGa -3'
miRNA:   3'- aCUCGCGGCagGCG-------CGUACGAa-AGUc -5'
6883 5' -56.1 NC_001875.2 + 96213 0.68 0.784746
Target:  5'- --uGCGCCagauaGUCCGCGUcgGCguugggcgcgUUCAGg -3'
miRNA:   3'- acuCGCGG-----CAGGCGCGuaCGa---------AAGUC- -5'
6883 5' -56.1 NC_001875.2 + 95740 0.7 0.654779
Target:  5'- -cGGCGCCG-CCGcCGCGUGCUg---- -3'
miRNA:   3'- acUCGCGGCaGGC-GCGUACGAaaguc -5'
6883 5' -56.1 NC_001875.2 + 90037 0.71 0.582144
Target:  5'- -cGGCGCCGg-CGCGCGUGCcggCGGa -3'
miRNA:   3'- acUCGCGGCagGCGCGUACGaaaGUC- -5'
6883 5' -56.1 NC_001875.2 + 85275 0.67 0.812107
Target:  5'- cGAGCGCCccgaacacgGUuuGCGCggGCggcgCGGg -3'
miRNA:   3'- aCUCGCGG---------CAggCGCGuaCGaaa-GUC- -5'
6883 5' -56.1 NC_001875.2 + 85245 0.7 0.654779
Target:  5'- cGAGCGCgGguUCCGCGCucgGCg--CGGa -3'
miRNA:   3'- aCUCGCGgC--AGGCGCGua-CGaaaGUC- -5'
6883 5' -56.1 NC_001875.2 + 81447 0.66 0.872661
Target:  5'- --uGCGCCGUCCGCaaaaaguacacgcugGUccGCggUCAGu -3'
miRNA:   3'- acuCGCGGCAGGCG---------------CGuaCGaaAGUC- -5'
6883 5' -56.1 NC_001875.2 + 80303 0.69 0.685794
Target:  5'- cGAGCGCCGUCgccaGCGCGUcCgagUCGu -3'
miRNA:   3'- aCUCGCGGCAGg---CGCGUAcGaa-AGUc -5'
6883 5' -56.1 NC_001875.2 + 79822 0.68 0.784746
Target:  5'- uUGAcGCGCaCGUCCGacacuGCGUGC--UCAGc -3'
miRNA:   3'- -ACU-CGCG-GCAGGCg----CGUACGaaAGUC- -5'
6883 5' -56.1 NC_001875.2 + 79292 0.7 0.644392
Target:  5'- -uGGCGCgCGUgCGCGCAuacuggcgcgUGCUUUCGa -3'
miRNA:   3'- acUCGCG-GCAgGCGCGU----------ACGAAAGUc -5'
6883 5' -56.1 NC_001875.2 + 72710 0.67 0.820902
Target:  5'- gUGcGCGCCGUUaauUGCGCuUGCgcgUCGGc -3'
miRNA:   3'- -ACuCGCGGCAG---GCGCGuACGaa-AGUC- -5'
6883 5' -56.1 NC_001875.2 + 72086 0.71 0.602825
Target:  5'- uUGGGCGCCGUgguuUCGCGCAaagUGCUg---- -3'
miRNA:   3'- -ACUCGCGGCA----GGCGCGU---ACGAaaguc -5'
6883 5' -56.1 NC_001875.2 + 71931 0.66 0.84619
Target:  5'- cGAGCGCCuugaCCGCGCGcuccGCgcgCAGc -3'
miRNA:   3'- aCUCGCGGca--GGCGCGUa---CGaaaGUC- -5'
6883 5' -56.1 NC_001875.2 + 66057 0.67 0.829519
Target:  5'- cGcGCGCCGacgCCGCGCgcGUGCUcgccCAGc -3'
miRNA:   3'- aCuCGCGGCa--GGCGCG--UACGAaa--GUC- -5'
6883 5' -56.1 NC_001875.2 + 65422 0.67 0.803143
Target:  5'- -uGGCGCCGauaUCCGCGUcgGCggacaucUUCAa -3'
miRNA:   3'- acUCGCGGC---AGGCGCGuaCGa------AAGUc -5'
6883 5' -56.1 NC_001875.2 + 65258 0.67 0.812107
Target:  5'- aGAG-GCCGUCaaguCGCGCA-GCUUUguGc -3'
miRNA:   3'- aCUCgCGGCAG----GCGCGUaCGAAAguC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.