miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6884 3' -60.4 NC_001875.2 + 16842 0.66 0.644809
Target:  5'- uGUGCUagcaUGCGUAGCcGUGUuaaucggcgccGCCAGCGc -3'
miRNA:   3'- gCGCGG----GCGCAUCGuCACG-----------UGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 15094 0.66 0.644809
Target:  5'- aGCuGCCCGCcaucaGGUGgGCCAGCGc -3'
miRNA:   3'- gCG-CGGGCGcaucgUCACgUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 53023 0.66 0.654922
Target:  5'- gGUGCCCacggacuacggGCGcaaAGCGGUGUACCuGCc -3'
miRNA:   3'- gCGCGGG-----------CGCa--UCGUCACGUGGuCGu -5'
6884 3' -60.4 NC_001875.2 + 47685 0.66 0.654922
Target:  5'- gCGCGCCgCGCGUuucucaacgcggGGCaAGUGCACgAcuGCc -3'
miRNA:   3'- -GCGCGG-GCGCA------------UCG-UCACGUGgU--CGu -5'
6884 3' -60.4 NC_001875.2 + 37583 0.66 0.665017
Target:  5'- uGCGCCgGCGcgAGCGccGCgGCCGGCc -3'
miRNA:   3'- gCGCGGgCGCa-UCGUcaCG-UGGUCGu -5'
6884 3' -60.4 NC_001875.2 + 85277 0.66 0.634687
Target:  5'- aGCGCCCcgaacacgguuuGCGcgGGCGGcgcggGCGCgGGCAu -3'
miRNA:   3'- gCGCGGG------------CGCa-UCGUCa----CGUGgUCGU- -5'
6884 3' -60.4 NC_001875.2 + 37887 0.66 0.665017
Target:  5'- cCGCGCCaGCGgcuuGCuGgcgcgGCACUGGCAc -3'
miRNA:   3'- -GCGCGGgCGCau--CGuCa----CGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 78457 0.66 0.634687
Target:  5'- uGCGCCCGCaaaAGCGcucgcUGCGCC-GCAg -3'
miRNA:   3'- gCGCGGGCGca-UCGUc----ACGUGGuCGU- -5'
6884 3' -60.4 NC_001875.2 + 131502 0.66 0.675087
Target:  5'- uCGacaGUCUGCGgcgcGCGGUGCAgCGGCu -3'
miRNA:   3'- -GCg--CGGGCGCau--CGUCACGUgGUCGu -5'
6884 3' -60.4 NC_001875.2 + 22854 0.66 0.644809
Target:  5'- aCGCGUCCaGCcUGGaCAccGUGCugCAGCGc -3'
miRNA:   3'- -GCGCGGG-CGcAUC-GU--CACGugGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 50751 0.66 0.685121
Target:  5'- --gGCCCGCGUcgcaAGCcGUGUccuuuACCGGCu -3'
miRNA:   3'- gcgCGGGCGCA----UCGuCACG-----UGGUCGu -5'
6884 3' -60.4 NC_001875.2 + 54844 0.66 0.660982
Target:  5'- aCGCGCCCGUGauaaacuguucgcAGUAGUGCAgCAcGUu -3'
miRNA:   3'- -GCGCGGGCGCa------------UCGUCACGUgGU-CGu -5'
6884 3' -60.4 NC_001875.2 + 77724 0.66 0.634687
Target:  5'- cCGgGCCCGUuuGUcauGUAcGUGCGCUGGCAg -3'
miRNA:   3'- -GCgCGGGCG--CAu--CGU-CACGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 108739 0.66 0.634687
Target:  5'- aGCgGCCUuugGCGgGGCAGcUGCACgCGGCGc -3'
miRNA:   3'- gCG-CGGG---CGCaUCGUC-ACGUG-GUCGU- -5'
6884 3' -60.4 NC_001875.2 + 21682 0.66 0.665017
Target:  5'- aCGcCGCCCGaCGagcgcgacGCGGUGCugCGGUc -3'
miRNA:   3'- -GC-GCGGGC-GCau------CGUCACGugGUCGu -5'
6884 3' -60.4 NC_001875.2 + 124867 0.66 0.634687
Target:  5'- -aUGCCCGCuGUucaAGCAGcGCGCCguGGCGa -3'
miRNA:   3'- gcGCGGGCG-CA---UCGUCaCGUGG--UCGU- -5'
6884 3' -60.4 NC_001875.2 + 114721 0.66 0.685121
Target:  5'- gGCGUgUGCuauuuuUGGCGGUGCGUCAGCGa -3'
miRNA:   3'- gCGCGgGCGc-----AUCGUCACGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 71148 0.66 0.644809
Target:  5'- gCGCGgCCGCGUugGGCAuuacagaaacUGcCGCCAGCGc -3'
miRNA:   3'- -GCGCgGGCGCA--UCGUc---------AC-GUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 59286 0.66 0.654922
Target:  5'- cCGCGCCCGCGcccGCA--GCGCCcGUu -3'
miRNA:   3'- -GCGCGGGCGCau-CGUcaCGUGGuCGu -5'
6884 3' -60.4 NC_001875.2 + 6614 0.66 0.675087
Target:  5'- cCGCG-CCGCac-GCGGUGUacucguGCCAGCGa -3'
miRNA:   3'- -GCGCgGGCGcauCGUCACG------UGGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.