miRNA display CGI


Results 1 - 20 of 164 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6884 3' -60.4 NC_001875.2 + 88036 0.69 0.458592
Target:  5'- -aCGCCCGCGcAGCAGccaaGCCAGCc -3'
miRNA:   3'- gcGCGGGCGCaUCGUCacg-UGGUCGu -5'
6884 3' -60.4 NC_001875.2 + 100584 0.71 0.397132
Target:  5'- uGCGUCgaCGCGUAcGCGGgccggGCGCCGGCc -3'
miRNA:   3'- gCGCGG--GCGCAU-CGUCa----CGUGGUCGu -5'
6884 3' -60.4 NC_001875.2 + 44456 0.7 0.422828
Target:  5'- gGCG-CCGuCGgcGCAGUGCGCCAagucguGCAc -3'
miRNA:   3'- gCGCgGGC-GCauCGUCACGUGGU------CGU- -5'
6884 3' -60.4 NC_001875.2 + 56304 0.7 0.431613
Target:  5'- gGCGCCCaaGCGUauGGCGGUG-GCgGGCAc -3'
miRNA:   3'- gCGCGGG--CGCA--UCGUCACgUGgUCGU- -5'
6884 3' -60.4 NC_001875.2 + 114642 0.7 0.435157
Target:  5'- aGCGCUCGCGaacggcgugugcuauUuuuGGCGGUGCGUCAGCGg -3'
miRNA:   3'- gCGCGGGCGC---------------A---UCGUCACGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 109824 0.7 0.440504
Target:  5'- aCGCGUCUGUGgauugGGCAGU--GCCGGCGg -3'
miRNA:   3'- -GCGCGGGCGCa----UCGUCAcgUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 47227 0.69 0.454942
Target:  5'- gGCGacgacgaaauggaCCGCGUguacAGCcucGUGCACCAGCGg -3'
miRNA:   3'- gCGCg------------GGCGCA----UCGu--CACGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 33483 0.69 0.457678
Target:  5'- gCGCGCCgCGCGcUGG-GGUGCGCCAaccgauuguacacGCAg -3'
miRNA:   3'- -GCGCGG-GCGC-AUCgUCACGUGGU-------------CGU- -5'
6884 3' -60.4 NC_001875.2 + 35466 0.69 0.458592
Target:  5'- aCGCGCaggacCUGCagcGCAuGUGCGCCAGCAa -3'
miRNA:   3'- -GCGCG-----GGCGcauCGU-CACGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 42445 0.71 0.388792
Target:  5'- -aCGCCUGCGUcAGCGGccGCugCGGCGa -3'
miRNA:   3'- gcGCGGGCGCA-UCGUCa-CGugGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 42860 0.71 0.388792
Target:  5'- gGCGCgCCGCaGgcGCAGgucCGCCAGCGc -3'
miRNA:   3'- gCGCG-GGCG-CauCGUCac-GUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 87994 0.72 0.348855
Target:  5'- gCGaCGCCCGCGcAGCAGccaaGCCAGCc -3'
miRNA:   3'- -GC-GCGGGCGCaUCGUCacg-UGGUCGu -5'
6884 3' -60.4 NC_001875.2 + 78709 0.76 0.178712
Target:  5'- aCGCGCCCGUGUGcGUGucgucgucaaacuuGUGCAUCAGCAc -3'
miRNA:   3'- -GCGCGGGCGCAU-CGU--------------CACGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 99366 0.76 0.178712
Target:  5'- gCGCGCCCGCcaaGUGGCcaaagcgccgcaccGGcgGCGCCAGCGg -3'
miRNA:   3'- -GCGCGGGCG---CAUCG--------------UCa-CGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 114996 0.74 0.241342
Target:  5'- uGCGCCCGCGUAGCGa---AUCGGCGg -3'
miRNA:   3'- gCGCGGGCGCAUCGUcacgUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 59725 0.74 0.265341
Target:  5'- aGCgGCUCGCGcuggAGCAGUGguUCAGCAc -3'
miRNA:   3'- gCG-CGGGCGCa---UCGUCACguGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 16260 0.73 0.290567
Target:  5'- aCGCGCgUGCGUcacguggugcccGGCGaccgcacguccauGUGCGCCAGCAu -3'
miRNA:   3'- -GCGCGgGCGCA------------UCGU-------------CACGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 68694 0.72 0.31193
Target:  5'- gCGUGCCCGUGgacCcGUGCGCCGGCc -3'
miRNA:   3'- -GCGCGGGCGCaucGuCACGUGGUCGu -5'
6884 3' -60.4 NC_001875.2 + 32775 0.72 0.340471
Target:  5'- gCGCGUCCucgcgcgGCGUgGGCGGgcgccGCGCCGGCAa -3'
miRNA:   3'- -GCGCGGG-------CGCA-UCGUCa----CGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 44014 0.72 0.341227
Target:  5'- cCGUGCCCaGCGU-GCuGUaccgcaGCACCGGCAu -3'
miRNA:   3'- -GCGCGGG-CGCAuCGuCA------CGUGGUCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.