miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6884 3' -60.4 NC_001875.2 + 1011 0.69 0.495905
Target:  5'- gCGgGCCCguucuugcagcGCGUGGCGGggcccgagGCGCaCAGCGu -3'
miRNA:   3'- -GCgCGGG-----------CGCAUCGUCa-------CGUG-GUCGU- -5'
6884 3' -60.4 NC_001875.2 + 1317 0.69 0.505449
Target:  5'- gGCGCgUGCuauuuuUAGCGGUGCGUCAGCGg -3'
miRNA:   3'- gCGCGgGCGc-----AUCGUCACGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 1383 0.73 0.284583
Target:  5'- gGCGCgUGC-UAGCGGUGCGUCAGCGg -3'
miRNA:   3'- gCGCGgGCGcAUCGUCACGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 1407 0.73 0.304911
Target:  5'- gGCGCCCugGUGUgcuauuuuuAGCGGUGCGUCAGCGg -3'
miRNA:   3'- gCGCGGG--CGCA---------UCGUCACGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 1479 0.69 0.505449
Target:  5'- gGCGCgUGCuacuuuUAGCGGUGCGUCAGCGa -3'
miRNA:   3'- gCGCGgGCGc-----AUCGUCACGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 1532 0.69 0.486443
Target:  5'- gGCGCUcucgaacggCGCGUgcuauuuuuAGCGGUGCGUCAGCGa -3'
miRNA:   3'- gCGCGG---------GCGCA---------UCGUCACGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 1611 0.69 0.505449
Target:  5'- gGCGCgUGCuauuuuUAGCGGUGCGUCAGCGa -3'
miRNA:   3'- gCGCGgGCGc-----AUCGUCACGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 1677 0.69 0.505449
Target:  5'- gGCGCgUGCuauuuuUAGCGGUGCGUCAGCGa -3'
miRNA:   3'- gCGCGgGCGc-----AUCGUCACGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 1743 0.69 0.505449
Target:  5'- gGCGUgUGC-UAGCGGUGCcUCAGCGg -3'
miRNA:   3'- gCGCGgGCGcAUCGUCACGuGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 1803 0.7 0.440504
Target:  5'- gGCGCgUGCuauuuuUAGCGGUGCGUCAGCAa -3'
miRNA:   3'- gCGCGgGCGc-----AUCGUCACGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 1869 0.7 0.440504
Target:  5'- gGCGCgUGCuauuuuUAGCAGUGCGUCAGCGg -3'
miRNA:   3'- gCGCGgGCGc-----AUCGUCACGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 5846 1.08 0.000979
Target:  5'- aCGCGCCCGCGUAGCAGUGCACCAGCAc -3'
miRNA:   3'- -GCGCGGGCGCAUCGUCACGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 5914 0.67 0.624562
Target:  5'- aGCGCCgGCaUGGCguugGGUaGCGCCGcGCAg -3'
miRNA:   3'- gCGCGGgCGcAUCG----UCA-CGUGGU-CGU- -5'
6884 3' -60.4 NC_001875.2 + 6614 0.66 0.675087
Target:  5'- cCGCG-CCGCac-GCGGUGUacucguGCCAGCGa -3'
miRNA:   3'- -GCGCgGGCGcauCGUCACG------UGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 6990 0.73 0.298013
Target:  5'- aGCgGCCgGUGUGGguGUGCugcugGCCGGCGg -3'
miRNA:   3'- gCG-CGGgCGCAUCguCACG-----UGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 7446 0.68 0.515072
Target:  5'- gCGCGCCgGCGauugcGGCGGUGUA-CGGCc -3'
miRNA:   3'- -GCGCGGgCGCa----UCGUCACGUgGUCGu -5'
6884 3' -60.4 NC_001875.2 + 9587 0.67 0.614443
Target:  5'- --gGCCUGCGguUAGCGGUggGCGCguGCAa -3'
miRNA:   3'- gcgCGGGCGC--AUCGUCA--CGUGguCGU- -5'
6884 3' -60.4 NC_001875.2 + 9726 0.69 0.505449
Target:  5'- cCGCGCCCgaaGCGUGGCAcGUGUug-AGCGu -3'
miRNA:   3'- -GCGCGGG---CGCAUCGU-CACGuggUCGU- -5'
6884 3' -60.4 NC_001875.2 + 11812 0.67 0.614443
Target:  5'- cCGCGUCgGUGUuuGUGGUcGCGCCGGUg -3'
miRNA:   3'- -GCGCGGgCGCAu-CGUCA-CGUGGUCGu -5'
6884 3' -60.4 NC_001875.2 + 12089 0.68 0.554245
Target:  5'- aCGCaCCgGCGgcgagcuuUGGCGGUaCACCAGCAg -3'
miRNA:   3'- -GCGcGGgCGC--------AUCGUCAcGUGGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.