miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6884 3' -60.4 NC_001875.2 + 5846 1.08 0.000979
Target:  5'- aCGCGCCCGCGUAGCAGUGCACCAGCAc -3'
miRNA:   3'- -GCGCGGGCGCAUCGUCACGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 77090 0.76 0.175621
Target:  5'- uGCGCUgGCGgugccGGCGGUGCGCCcGCAc -3'
miRNA:   3'- gCGCGGgCGCa----UCGUCACGUGGuCGU- -5'
6884 3' -60.4 NC_001875.2 + 78709 0.76 0.178712
Target:  5'- aCGCGCCCGUGUGcGUGucgucgucaaacuuGUGCAUCAGCAc -3'
miRNA:   3'- -GCGCGGGCGCAU-CGU--------------CACGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 99366 0.76 0.178712
Target:  5'- gCGCGCCCGCcaaGUGGCcaaagcgccgcaccGGcgGCGCCAGCGg -3'
miRNA:   3'- -GCGCGGGCG---CAUCG--------------UCa-CGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 88817 0.76 0.189211
Target:  5'- cCGCGCCCGCGgcGCGcgGCACUcGCAa -3'
miRNA:   3'- -GCGCGGGCGCauCGUcaCGUGGuCGU- -5'
6884 3' -60.4 NC_001875.2 + 98634 0.75 0.219179
Target:  5'- cCGCGCCCGCGUuugccGGCAGcgagGCGCUGGa- -3'
miRNA:   3'- -GCGCGGGCGCA-----UCGUCa---CGUGGUCgu -5'
6884 3' -60.4 NC_001875.2 + 114996 0.74 0.241342
Target:  5'- uGCGCCCGCGUAGCGa---AUCGGCGg -3'
miRNA:   3'- gCGCGGGCGCAUCGUcacgUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 36091 0.74 0.241342
Target:  5'- aCGCGCUCGCGcGGCAGcacGCGgCGGCGg -3'
miRNA:   3'- -GCGCGGGCGCaUCGUCa--CGUgGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 59725 0.74 0.265341
Target:  5'- aGCgGCUCGCGcuggAGCAGUGguUCAGCAc -3'
miRNA:   3'- gCG-CGGGCGCa---UCGUCACguGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 12672 0.73 0.271635
Target:  5'- aCGCGCgCCGCGuUGGCcgGGUGUGgCGGCAa -3'
miRNA:   3'- -GCGCG-GGCGC-AUCG--UCACGUgGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 1383 0.73 0.284583
Target:  5'- gGCGCgUGC-UAGCGGUGCGUCAGCGg -3'
miRNA:   3'- gCGCGgGCGcAUCGUCACGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 16260 0.73 0.290567
Target:  5'- aCGCGCgUGCGUcacguggugcccGGCGaccgcacguccauGUGCGCCAGCAu -3'
miRNA:   3'- -GCGCGgGCGCA------------UCGU-------------CACGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 6990 0.73 0.298013
Target:  5'- aGCgGCCgGUGUGGguGUGCugcugGCCGGCGg -3'
miRNA:   3'- gCG-CGGgCGCAUCguCACG-----UGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 1407 0.73 0.304911
Target:  5'- gGCGCCCugGUGUgcuauuuuuAGCGGUGCGUCAGCGg -3'
miRNA:   3'- gCGCGGG--CGCA---------UCGUCACGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 68694 0.72 0.31193
Target:  5'- gCGUGCCCGUGgacCcGUGCGCCGGCc -3'
miRNA:   3'- -GCGCGGGCGCaucGuCACGUGGUCGu -5'
6884 3' -60.4 NC_001875.2 + 38230 0.72 0.33372
Target:  5'- uGCGCUCGCGguccccccagUAGUcGUGCAgCAGCAu -3'
miRNA:   3'- gCGCGGGCGC----------AUCGuCACGUgGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 32775 0.72 0.340471
Target:  5'- gCGCGUCCucgcgcgGCGUgGGCGGgcgccGCGCCGGCAa -3'
miRNA:   3'- -GCGCGGG-------CGCA-UCGUCa----CGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 59581 0.72 0.341227
Target:  5'- uGCGCUgcaGCGUGGCcgacGUGCGCgAGCAc -3'
miRNA:   3'- gCGCGGg--CGCAUCGu---CACGUGgUCGU- -5'
6884 3' -60.4 NC_001875.2 + 44014 0.72 0.341227
Target:  5'- cCGUGCCCaGCGU-GCuGUaccgcaGCACCGGCAu -3'
miRNA:   3'- -GCGCGGG-CGCAuCGuCA------CGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 87994 0.72 0.348855
Target:  5'- gCGaCGCCCGCGcAGCAGccaaGCCAGCc -3'
miRNA:   3'- -GC-GCGGGCGCaUCGUCacg-UGGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.