miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6888 5' -60.9 NC_001875.2 + 67218 0.66 0.635145
Target:  5'- aGUUGcGCuGGUgGGCGCaaacgggugGCCCGACugCg -3'
miRNA:   3'- -CAACcCGuCCG-CCGCG---------CGGGUUGugG- -5'
6888 5' -60.9 NC_001875.2 + 38474 0.66 0.645191
Target:  5'- aUUGGuGCAG-C-GCGUGCUCGACACUc -3'
miRNA:   3'- cAACC-CGUCcGcCGCGCGGGUUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 5927 0.66 0.655226
Target:  5'- cGUUGGGUAGcGCcgcgcaggugGGCGCGgCCucgcaguACACg -3'
miRNA:   3'- -CAACCCGUC-CG----------CCGCGCgGGu------UGUGg -5'
6888 5' -60.9 NC_001875.2 + 113588 0.66 0.629116
Target:  5'- aUUGGGCcagcacggcguucgaGucGGCGGCGgGCCgCGGCGgCa -3'
miRNA:   3'- cAACCCG---------------U--CCGCCGCgCGG-GUUGUgG- -5'
6888 5' -60.9 NC_001875.2 + 68710 0.66 0.625097
Target:  5'- -gUGcGCcGGCcGCGCGCCCGGcCGCUa -3'
miRNA:   3'- caACcCGuCCGcCGCGCGGGUU-GUGG- -5'
6888 5' -60.9 NC_001875.2 + 25940 0.66 0.635145
Target:  5'- --cGuGguGGCGcCGCGCCCGccaucggguacuGCACCg -3'
miRNA:   3'- caaCcCguCCGCcGCGCGGGU------------UGUGG- -5'
6888 5' -60.9 NC_001875.2 + 124551 0.66 0.645191
Target:  5'- --gGGGUcGGCGGCGgGgUCGcuuuggcggcACACCg -3'
miRNA:   3'- caaCCCGuCCGCCGCgCgGGU----------UGUGG- -5'
6888 5' -60.9 NC_001875.2 + 42925 0.66 0.642178
Target:  5'- -gUGGGCGucgcagucaaacguGGCGuGCGUcagcaGCCCGcgcagcGCGCCa -3'
miRNA:   3'- caACCCGU--------------CCGC-CGCG-----CGGGU------UGUGG- -5'
6888 5' -60.9 NC_001875.2 + 40839 0.66 0.615054
Target:  5'- -gUGGGCAaGaCGGCGCucGCCaagacgcGCACCg -3'
miRNA:   3'- caACCCGUcC-GCCGCG--CGGgu-----UGUGG- -5'
6888 5' -60.9 NC_001875.2 + 128970 0.66 0.615054
Target:  5'- -cUGGGCGaGCGGaugaCGCGCUCGccCACCc -3'
miRNA:   3'- caACCCGUcCGCC----GCGCGGGUu-GUGG- -5'
6888 5' -60.9 NC_001875.2 + 63256 0.66 0.675236
Target:  5'- --cGGGCucGGCGGCcagcgGCGCCaCGcgguGCGCg -3'
miRNA:   3'- caaCCCGu-CCGCCG-----CGCGG-GU----UGUGg -5'
6888 5' -60.9 NC_001875.2 + 85293 0.66 0.635145
Target:  5'- uUUGcGCGGGCGGCGCggGCgCgGGCAUUg -3'
miRNA:   3'- cAACcCGUCCGCCGCG--CG-GgUUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 20637 0.66 0.635145
Target:  5'- -gUGaGCAacaaaaaacGGCGcGCGcCGCCCAGCGCg -3'
miRNA:   3'- caACcCGU---------CCGC-CGC-GCGGGUUGUGg -5'
6888 5' -60.9 NC_001875.2 + 74350 0.66 0.641173
Target:  5'- -gUGGGCuuucaaacuagacGGCGuGCGCGgCCgCGGCGCg -3'
miRNA:   3'- caACCCGu------------CCGC-CGCGC-GG-GUUGUGg -5'
6888 5' -60.9 NC_001875.2 + 97893 0.66 0.635145
Target:  5'- --cGGGCAcguuGCgGGCGUcgGCgCCGACGCCc -3'
miRNA:   3'- caaCCCGUc---CG-CCGCG--CG-GGUUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 117926 0.66 0.615054
Target:  5'- --cGGcaagcuGCAGGcCGGCGUGCgCGcCGCCg -3'
miRNA:   3'- caaCC------CGUCC-GCCGCGCGgGUuGUGG- -5'
6888 5' -60.9 NC_001875.2 + 50276 0.66 0.615054
Target:  5'- --cGGGCAGGUGGUacaucgcugcuGuCGUCCGACuCUg -3'
miRNA:   3'- caaCCCGUCCGCCG-----------C-GCGGGUUGuGG- -5'
6888 5' -60.9 NC_001875.2 + 44551 0.66 0.635145
Target:  5'- cGUUGGGCA-GCcGCGCGUUgCGACAUa -3'
miRNA:   3'- -CAACCCGUcCGcCGCGCGG-GUUGUGg -5'
6888 5' -60.9 NC_001875.2 + 115065 0.66 0.615054
Target:  5'- -aUGGugaaGCuuuacGCGGCGCGCagucaCGACGCCg -3'
miRNA:   3'- caACC----CGuc---CGCCGCGCGg----GUUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 43905 0.66 0.629116
Target:  5'- --cGGGUccuGGCGGUcaugagcuuggagucGCGCaCCAGCGuCCa -3'
miRNA:   3'- caaCCCGu--CCGCCG---------------CGCG-GGUUGU-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.