miRNA display CGI


Results 1 - 20 of 205 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6888 5' -60.9 NC_001875.2 + 8818 1.11 0.000582
Target:  5'- gGUUGGGCAGGCGGCGCGCCCAACACCa -3'
miRNA:   3'- -CAACCCGUCCGCCGCGCGGGUUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 82052 0.82 0.067
Target:  5'- uGUUGGG--GGCGGCGCGCaguaCAGCACCg -3'
miRNA:   3'- -CAACCCguCCGCCGCGCGg---GUUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 110344 0.78 0.121888
Target:  5'- uUUGGGCuGcacuCGGCGuCGCCCGACGCCu -3'
miRNA:   3'- cAACCCGuCc---GCCGC-GCGGGUUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 32792 0.78 0.123141
Target:  5'- -gUGGGCGGGCGcCGCGCCggcaagcucggcgaaCGGCGCCg -3'
miRNA:   3'- caACCCGUCCGCcGCGCGG---------------GUUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 92504 0.77 0.145245
Target:  5'- -aUGGGCgcaaaacGGGCGcucguGCGCGCCCGGCGCg -3'
miRNA:   3'- caACCCG-------UCCGC-----CGCGCGGGUUGUGg -5'
6888 5' -60.9 NC_001875.2 + 43597 0.77 0.160994
Target:  5'- --gGcGGCAgcGGCGGCGCGCgCCGcuuGCGCCg -3'
miRNA:   3'- caaC-CCGU--CCGCCGCGCG-GGU---UGUGG- -5'
6888 5' -60.9 NC_001875.2 + 66618 0.76 0.186816
Target:  5'- --cGGGCAGcGUGGCGCGCUugagCAACAgCg -3'
miRNA:   3'- caaCCCGUC-CGCCGCGCGG----GUUGUgG- -5'
6888 5' -60.9 NC_001875.2 + 122466 0.75 0.20105
Target:  5'- aGUU-GGCu-GCGGCGCGCgCAGCACCu -3'
miRNA:   3'- -CAAcCCGucCGCCGCGCGgGUUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 39664 0.75 0.20105
Target:  5'- uUUGGGCcGGCGGCGCGCggcggCgAGCugCu -3'
miRNA:   3'- cAACCCGuCCGCCGCGCG-----GgUUGugG- -5'
6888 5' -60.9 NC_001875.2 + 29833 0.75 0.20105
Target:  5'- --cGGGCAcGGCcgacGGCcccGUGCCCGGCACCu -3'
miRNA:   3'- caaCCCGU-CCG----CCG---CGCGGGUUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 77098 0.75 0.203017
Target:  5'- --cGGuGCcGGCGGUGCGCCCGcacggcuaccuguccACGCCc -3'
miRNA:   3'- caaCC-CGuCCGCCGCGCGGGU---------------UGUGG- -5'
6888 5' -60.9 NC_001875.2 + 54574 0.75 0.211056
Target:  5'- --cGcGGCGgccgcuucgcccGGCGGCGCGCCCAcgGCGCg -3'
miRNA:   3'- caaC-CCGU------------CCGCCGCGCGGGU--UGUGg -5'
6888 5' -60.9 NC_001875.2 + 42294 0.75 0.213108
Target:  5'- -cUGGGCAcccgcGGCGccaaguacagaucgaGCGCGCCCAGCgGCCc -3'
miRNA:   3'- caACCCGU-----CCGC---------------CGCGCGGGUUG-UGG- -5'
6888 5' -60.9 NC_001875.2 + 65778 0.75 0.216218
Target:  5'- --cGGGC-GGCGGCGCGUCgucguugAGCGCCa -3'
miRNA:   3'- caaCCCGuCCGCCGCGCGGg------UUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 3044 0.75 0.221487
Target:  5'- cGUUGGGCAGcGCguaagaGGCGCGCagCGgcGCGCCg -3'
miRNA:   3'- -CAACCCGUC-CG------CCGCGCGg-GU--UGUGG- -5'
6888 5' -60.9 NC_001875.2 + 11992 0.74 0.232355
Target:  5'- cGUUGGGCGcgggugugguGGCGaGCGCGgCCAACAa- -3'
miRNA:   3'- -CAACCCGU----------CCGC-CGCGCgGGUUGUgg -5'
6888 5' -60.9 NC_001875.2 + 37963 0.74 0.243092
Target:  5'- --cGGGUGuucacgcGGCGGCcugcGCGCUCAGCGCCg -3'
miRNA:   3'- caaCCCGU-------CCGCCG----CGCGGGUUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 79861 0.74 0.247735
Target:  5'- uGUUGGGguGGCGcgugguccacgcgcGCGCGUgCGGCACg -3'
miRNA:   3'- -CAACCCguCCGC--------------CGCGCGgGUUGUGg -5'
6888 5' -60.9 NC_001875.2 + 38778 0.74 0.248907
Target:  5'- uGUUGGGCGGaGa-GCGCGCCCGcaauucgGCGCUg -3'
miRNA:   3'- -CAACCCGUC-CgcCGCGCGGGU-------UGUGG- -5'
6888 5' -60.9 NC_001875.2 + 82196 0.74 0.249495
Target:  5'- -aUGGGCGccGGCGGC-CGCUCGuguCGCCg -3'
miRNA:   3'- caACCCGU--CCGCCGcGCGGGUu--GUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.