miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6888 5' -60.9 NC_001875.2 + 110910 0.71 0.358739
Target:  5'- --cGGGCGuuugagcuGGCcauGGCGCGCCCA-CACg -3'
miRNA:   3'- caaCCCGU--------CCG---CCGCGCGGGUuGUGg -5'
6888 5' -60.9 NC_001875.2 + 10457 0.73 0.260881
Target:  5'- --cGcGGCGcGGCGGCGCGCUCAgugaaugGCGCUu -3'
miRNA:   3'- caaC-CCGU-CCGCCGCGCGGGU-------UGUGG- -5'
6888 5' -60.9 NC_001875.2 + 47022 0.73 0.267043
Target:  5'- cUUGGGCAccgagggcggaguGGUgGGCGUGCCCGACAa- -3'
miRNA:   3'- cAACCCGU-------------CCG-CCGCGCGGGUUGUgg -5'
6888 5' -60.9 NC_001875.2 + 122131 0.73 0.267665
Target:  5'- --cGGGC--GCGGCGCGgCCGGCGCg -3'
miRNA:   3'- caaCCCGucCGCCGCGCgGGUUGUGg -5'
6888 5' -60.9 NC_001875.2 + 70195 0.73 0.280363
Target:  5'- --cGGGCGGcGaCGGCgaccacuggGCGCCCGagGCGCCg -3'
miRNA:   3'- caaCCCGUC-C-GCCG---------CGCGGGU--UGUGG- -5'
6888 5' -60.9 NC_001875.2 + 13631 0.72 0.31419
Target:  5'- -aUGuGGCAGGCGGUugccGCGCCgccgcuCAACACa -3'
miRNA:   3'- caAC-CCGUCCGCCG----CGCGG------GUUGUGg -5'
6888 5' -60.9 NC_001875.2 + 40784 0.71 0.343411
Target:  5'- ---cGGCGuGCuGcGCGUGCCCAGCACCa -3'
miRNA:   3'- caacCCGUcCG-C-CGCGCGGGUUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 54012 0.71 0.343411
Target:  5'- ---cGGCcuuGGCGGCGCGCgcguaCCGGCACUc -3'
miRNA:   3'- caacCCGu--CCGCCGCGCG-----GGUUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 44393 0.71 0.358739
Target:  5'- uUUGGGCAcGuCGGCGCGCgC-GCACUg -3'
miRNA:   3'- cAACCCGUcC-GCCGCGCGgGuUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 37963 0.74 0.243092
Target:  5'- --cGGGUGuucacgcGGCGGCcugcGCGCUCAGCGCCg -3'
miRNA:   3'- caaCCCGU-------CCGCCG----CGCGGGUUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 11992 0.74 0.232355
Target:  5'- cGUUGGGCGcgggugugguGGCGaGCGCGgCCAACAa- -3'
miRNA:   3'- -CAACCCGU----------CCGC-CGCGCgGGUUGUgg -5'
6888 5' -60.9 NC_001875.2 + 65778 0.75 0.216218
Target:  5'- --cGGGC-GGCGGCGCGUCgucguugAGCGCCa -3'
miRNA:   3'- caaCCCGuCCGCCGCGCGGg------UUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 110344 0.78 0.121888
Target:  5'- uUUGGGCuGcacuCGGCGuCGCCCGACGCCu -3'
miRNA:   3'- cAACCCGuCc---GCCGC-GCGGGUUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 32792 0.78 0.123141
Target:  5'- -gUGGGCGGGCGcCGCGCCggcaagcucggcgaaCGGCGCCg -3'
miRNA:   3'- caACCCGUCCGCcGCGCGG---------------GUUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 92504 0.77 0.145245
Target:  5'- -aUGGGCgcaaaacGGGCGcucguGCGCGCCCGGCGCg -3'
miRNA:   3'- caACCCG-------UCCGC-----CGCGCGGGUUGUGg -5'
6888 5' -60.9 NC_001875.2 + 66618 0.76 0.186816
Target:  5'- --cGGGCAGcGUGGCGCGCUugagCAACAgCg -3'
miRNA:   3'- caaCCCGUC-CGCCGCGCGG----GUUGUgG- -5'
6888 5' -60.9 NC_001875.2 + 39664 0.75 0.20105
Target:  5'- uUUGGGCcGGCGGCGCGCggcggCgAGCugCu -3'
miRNA:   3'- cAACCCGuCCGCCGCGCG-----GgUUGugG- -5'
6888 5' -60.9 NC_001875.2 + 122466 0.75 0.20105
Target:  5'- aGUU-GGCu-GCGGCGCGCgCAGCACCu -3'
miRNA:   3'- -CAAcCCGucCGCCGCGCGgGUUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 54574 0.75 0.211056
Target:  5'- --cGcGGCGgccgcuucgcccGGCGGCGCGCCCAcgGCGCg -3'
miRNA:   3'- caaC-CCGU------------CCGCCGCGCGGGU--UGUGg -5'
6888 5' -60.9 NC_001875.2 + 42294 0.75 0.213108
Target:  5'- -cUGGGCAcccgcGGCGccaaguacagaucgaGCGCGCCCAGCgGCCc -3'
miRNA:   3'- caACCCGU-----CCGC---------------CGCGCGGGUUG-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.