miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6888 5' -60.9 NC_001875.2 + 44 0.68 0.506829
Target:  5'- aGUUGGuGCucaacucggcGGCGGCgGCGaaCGACACCa -3'
miRNA:   3'- -CAACC-CGu---------CCGCCG-CGCggGUUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 770 0.69 0.487007
Target:  5'- --gGGGCAgcugacGGCGGCGCGCggaacguUCAugGCg -3'
miRNA:   3'- caaCCCGU------CCGCCGCGCG-------GGUugUGg -5'
6888 5' -60.9 NC_001875.2 + 2540 0.67 0.574083
Target:  5'- --cGGGCcGGUgaacaacGGCGCGUCgGGCGCa -3'
miRNA:   3'- caaCCCGuCCG-------CCGCGCGGgUUGUGg -5'
6888 5' -60.9 NC_001875.2 + 2864 0.73 0.280363
Target:  5'- --aGGGUGGGCGaGCGCgucauccgcucGCCCAgcucACGCCu -3'
miRNA:   3'- caaCCCGUCCGC-CGCG-----------CGGGU----UGUGG- -5'
6888 5' -60.9 NC_001875.2 + 3044 0.75 0.221487
Target:  5'- cGUUGGGCAGcGCguaagaGGCGCGCagCGgcGCGCCg -3'
miRNA:   3'- -CAACCCGUC-CG------CCGCGCGg-GU--UGUGG- -5'
6888 5' -60.9 NC_001875.2 + 5187 0.68 0.529892
Target:  5'- --cGuGCAuGGCGGuCaacguccagguuuacGCGCCCGACGCCa -3'
miRNA:   3'- caaCcCGU-CCGCC-G---------------CGCGGGUUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 5927 0.66 0.655226
Target:  5'- cGUUGGGUAGcGCcgcgcaggugGGCGCGgCCucgcaguACACg -3'
miRNA:   3'- -CAACCCGUC-CG----------CCGCGCgGGu------UGUGg -5'
6888 5' -60.9 NC_001875.2 + 7013 0.69 0.478624
Target:  5'- ---uGGCcGGCGGCGCGUaucugaccuUUAGCGCCg -3'
miRNA:   3'- caacCCGuCCGCCGCGCG---------GGUUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 8818 1.11 0.000582
Target:  5'- gGUUGGGCAGGCGGCGCGCCCAACACCa -3'
miRNA:   3'- -CAACCCGUCCGCCGCGCGGGUUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 9360 0.66 0.674239
Target:  5'- cUUGGGCaucgcaaAGGUGcuGCGCGCgCCGcaGCCa -3'
miRNA:   3'- cAACCCG-------UCCGC--CGCGCG-GGUugUGG- -5'
6888 5' -60.9 NC_001875.2 + 9521 0.67 0.605024
Target:  5'- -aUGGGCGcGGaaGcCGCGCCCGAUAg- -3'
miRNA:   3'- caACCCGU-CCgcC-GCGCGGGUUGUgg -5'
6888 5' -60.9 NC_001875.2 + 9929 0.67 0.605024
Target:  5'- --cGGGCcGcaaguauucuaGCGGUGCuGCCC-ACGCCg -3'
miRNA:   3'- caaCCCGuC-----------CGCCGCG-CGGGuUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 10404 0.66 0.645191
Target:  5'- aGUUGcGGUAaa-GGCGCGCCguGCAUCc -3'
miRNA:   3'- -CAAC-CCGUccgCCGCGCGGguUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 10457 0.73 0.260881
Target:  5'- --cGcGGCGcGGCGGCGCGCUCAgugaaugGCGCUu -3'
miRNA:   3'- caaC-CCGU-CCGCCGCGCGGGU-------UGUGG- -5'
6888 5' -60.9 NC_001875.2 + 11002 0.68 0.516389
Target:  5'- ----uGCAGGCGcGCGUGCCCAugGugugCCu -3'
miRNA:   3'- caaccCGUCCGC-CGCGCGGGUugU----GG- -5'
6888 5' -60.9 NC_001875.2 + 11074 0.69 0.478624
Target:  5'- aGUUuGGCGuGGC-GCGCGCCCugGACACg -3'
miRNA:   3'- -CAAcCCGU-CCGcCGCGCGGG--UUGUGg -5'
6888 5' -60.9 NC_001875.2 + 11156 0.68 0.497346
Target:  5'- --cGGGgAGGCGuaccGCGCGCgCAucgacaaguugcGCGCCg -3'
miRNA:   3'- caaCCCgUCCGC----CGCGCGgGU------------UGUGG- -5'
6888 5' -60.9 NC_001875.2 + 11992 0.74 0.232355
Target:  5'- cGUUGGGCGcgggugugguGGCGaGCGCGgCCAACAa- -3'
miRNA:   3'- -CAACCCGU----------CCGC-CGCGCgGGUUGUgg -5'
6888 5' -60.9 NC_001875.2 + 12124 0.68 0.515429
Target:  5'- gGUUGGGguGGUaguccaacgucuuGGuCGCGCCaAACAgCCg -3'
miRNA:   3'- -CAACCCguCCG-------------CC-GCGCGGgUUGU-GG- -5'
6888 5' -60.9 NC_001875.2 + 12967 0.66 0.665244
Target:  5'- --cGcGGCGGGC-GUGgGCUCcGCGCCg -3'
miRNA:   3'- caaC-CCGUCCGcCGCgCGGGuUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.