miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6900 3' -57.1 NC_001875.2 + 118479 0.66 0.82884
Target:  5'- uGGAAAACGGCuagcacGCaCGCCaaguGUCCGGCGu -3'
miRNA:   3'- gUUUUUUGCCG------CGcGCGG----CGGGUCGC- -5'
6900 3' -57.1 NC_001875.2 + 63687 0.66 0.837188
Target:  5'- -----cGCGGCGCGCaGCguuCGCCgAuGCGg -3'
miRNA:   3'- guuuuuUGCCGCGCG-CG---GCGGgU-CGC- -5'
6900 3' -57.1 NC_001875.2 + 103822 0.66 0.82884
Target:  5'- -----uGCGGCGCGUGCUggGCCUucgccacccugGGCa -3'
miRNA:   3'- guuuuuUGCCGCGCGCGG--CGGG-----------UCGc -5'
6900 3' -57.1 NC_001875.2 + 117940 0.66 0.811613
Target:  5'- ------cCGGCguGCGCGCCGCC--GCGu -3'
miRNA:   3'- guuuuuuGCCG--CGCGCGGCGGguCGC- -5'
6900 3' -57.1 NC_001875.2 + 55329 0.66 0.837188
Target:  5'- ----cGACGGUGaugaCGCGCCGCUUcgggGGCGc -3'
miRNA:   3'- guuuuUUGCCGC----GCGCGGCGGG----UCGC- -5'
6900 3' -57.1 NC_001875.2 + 80285 0.66 0.837188
Target:  5'- ---uGAACGGCucGCacuugacgaGCGCCGUcgCCAGCGc -3'
miRNA:   3'- guuuUUUGCCG--CG---------CGCGGCG--GGUCGC- -5'
6900 3' -57.1 NC_001875.2 + 102717 0.66 0.853311
Target:  5'- aCAAGAcGCGGUGCuuuUGCUGCgaCGGCGg -3'
miRNA:   3'- -GUUUUuUGCCGCGc--GCGGCGg-GUCGC- -5'
6900 3' -57.1 NC_001875.2 + 36870 0.66 0.82884
Target:  5'- aAAAGAACGucgucGUGCGCGCgGCacaccgCCGGCa -3'
miRNA:   3'- gUUUUUUGC-----CGCGCGCGgCG------GGUCGc -5'
6900 3' -57.1 NC_001875.2 + 68568 0.66 0.82884
Target:  5'- ----cGGCGGuCGCGCaCCGCgUGGCGc -3'
miRNA:   3'- guuuuUUGCC-GCGCGcGGCGgGUCGC- -5'
6900 3' -57.1 NC_001875.2 + 84352 0.66 0.811613
Target:  5'- --cGGAGCGGCugcgccgguagGUGCGCgGCCUgccggGGCGg -3'
miRNA:   3'- guuUUUUGCCG-----------CGCGCGgCGGG-----UCGC- -5'
6900 3' -57.1 NC_001875.2 + 43696 0.66 0.819451
Target:  5'- ------uCGuGCGCccacacaauuuugGCGCCGCUCAGCa -3'
miRNA:   3'- guuuuuuGC-CGCG-------------CGCGGCGGGUCGc -5'
6900 3' -57.1 NC_001875.2 + 114028 0.66 0.820313
Target:  5'- ----uGGCGGC-CGCGCgGUCCAGaUGg -3'
miRNA:   3'- guuuuUUGCCGcGCGCGgCGGGUC-GC- -5'
6900 3' -57.1 NC_001875.2 + 29067 0.66 0.82884
Target:  5'- ----cAGCgGGCGUGuUGCUGCCaCGGCGc -3'
miRNA:   3'- guuuuUUG-CCGCGC-GCGGCGG-GUCGC- -5'
6900 3' -57.1 NC_001875.2 + 70174 0.66 0.811613
Target:  5'- aCAGGGuuUGGCGCaGCGa-GCCgGGCGg -3'
miRNA:   3'- -GUUUUuuGCCGCG-CGCggCGGgUCGC- -5'
6900 3' -57.1 NC_001875.2 + 126333 0.66 0.820313
Target:  5'- gUAAAcuGCGcGCGUGCGCCgGUCguGCu -3'
miRNA:   3'- -GUUUuuUGC-CGCGCGCGG-CGGguCGc -5'
6900 3' -57.1 NC_001875.2 + 37975 0.66 0.82884
Target:  5'- ----cGGCGGCcUGCG-CGCUCAGCGc -3'
miRNA:   3'- guuuuUUGCCGcGCGCgGCGGGUCGC- -5'
6900 3' -57.1 NC_001875.2 + 9918 0.66 0.810734
Target:  5'- ----cGACuGGCGCGCggGCCGCaaguauuCUAGCGg -3'
miRNA:   3'- guuuuUUG-CCGCGCG--CGGCG-------GGUCGC- -5'
6900 3' -57.1 NC_001875.2 + 31689 0.66 0.826301
Target:  5'- ------cCGGCguggaccgccgcuuGCGCGCCGC-CGGCGc -3'
miRNA:   3'- guuuuuuGCCG--------------CGCGCGGCGgGUCGC- -5'
6900 3' -57.1 NC_001875.2 + 118316 0.66 0.811613
Target:  5'- --cGAGGCGGCcggccGCGCGCUGCa-GGUGa -3'
miRNA:   3'- guuUUUUGCCG-----CGCGCGGCGggUCGC- -5'
6900 3' -57.1 NC_001875.2 + 32896 0.66 0.820313
Target:  5'- ---cAAACGGCugaacacgcGCGCGUCGCgCAcGCGc -3'
miRNA:   3'- guuuUUUGCCG---------CGCGCGGCGgGU-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.