Results 1 - 20 of 355 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6900 | 3' | -57.1 | NC_001875.2 | + | 10625 | 0.74 | 0.403383 |
Target: 5'- aCAAcAAcCGGcCG-GUGCCGCCCAGCGu -3' miRNA: 3'- -GUUuUUuGCC-GCgCGCGGCGGGUCGC- -5' |
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6900 | 3' | -57.1 | NC_001875.2 | + | 100266 | 0.76 | 0.316041 |
Target: 5'- ---uGGGCGGCGCGCaaggaaGCCGCCgGGCc -3' miRNA: 3'- guuuUUUGCCGCGCG------CGGCGGgUCGc -5' |
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6900 | 3' | -57.1 | NC_001875.2 | + | 95301 | 0.76 | 0.316041 |
Target: 5'- -cGGGGACGGUGCGCGCCaGCgCCguuuGGCGa -3' miRNA: 3'- guUUUUUGCCGCGCGCGG-CG-GG----UCGC- -5' |
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6900 | 3' | -57.1 | NC_001875.2 | + | 115755 | 0.75 | 0.330806 |
Target: 5'- ----uAGCGGCGUGCGCCaaaCCGGCGc -3' miRNA: 3'- guuuuUUGCCGCGCGCGGcg-GGUCGC- -5' |
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6900 | 3' | -57.1 | NC_001875.2 | + | 99591 | 0.75 | 0.361837 |
Target: 5'- aUAAAAGGCGGCGCGCaGCCaauuuGCCgCAGUu -3' miRNA: 3'- -GUUUUUUGCCGCGCG-CGG-----CGG-GUCGc -5' |
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6900 | 3' | -57.1 | NC_001875.2 | + | 74148 | 0.74 | 0.386405 |
Target: 5'- uCGAGGGcGCGGCGCcCGCCGCCgcCAGCu -3' miRNA: 3'- -GUUUUU-UGCCGCGcGCGGCGG--GUCGc -5' |
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6900 | 3' | -57.1 | NC_001875.2 | + | 122214 | 0.74 | 0.386405 |
Target: 5'- -----cACGGCGCGCGCacgcaGCUUAGCa -3' miRNA: 3'- guuuuuUGCCGCGCGCGg----CGGGUCGc -5' |
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6900 | 3' | -57.1 | NC_001875.2 | + | 77050 | 0.74 | 0.394835 |
Target: 5'- -----cGCGGUGCuaGUGCCGCCCGGUu -3' miRNA: 3'- guuuuuUGCCGCG--CGCGGCGGGUCGc -5' |
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6900 | 3' | -57.1 | NC_001875.2 | + | 92511 | 0.74 | 0.394835 |
Target: 5'- --cAAAACgGGCGCucGUGCgCGCCCGGCGc -3' miRNA: 3'- guuUUUUG-CCGCG--CGCG-GCGGGUCGC- -5' |
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6900 | 3' | -57.1 | NC_001875.2 | + | 40780 | 0.76 | 0.308848 |
Target: 5'- ---uAAACGGCGUgcuGCGCgUGCCCAGCa -3' miRNA: 3'- guuuUUUGCCGCG---CGCG-GCGGGUCGc -5' |
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6900 | 3' | -57.1 | NC_001875.2 | + | 37115 | 0.76 | 0.294837 |
Target: 5'- -------gGGCGCgGCGCCGCgCCGGCGu -3' miRNA: 3'- guuuuuugCCGCG-CGCGGCG-GGUCGC- -5' |
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6900 | 3' | -57.1 | NC_001875.2 | + | 81294 | 0.77 | 0.274756 |
Target: 5'- gCAAAAGACa-CGCGCGCCGCCggCGGCGc -3' miRNA: 3'- -GUUUUUUGccGCGCGCGGCGG--GUCGC- -5' |
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6900 | 3' | -57.1 | NC_001875.2 | + | 79643 | 0.83 | 0.105191 |
Target: 5'- -----cACGGCGCGCaGUCGCCCAGCa -3' miRNA: 3'- guuuuuUGCCGCGCG-CGGCGGGUCGc -5' |
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6900 | 3' | -57.1 | NC_001875.2 | + | 88242 | 0.83 | 0.113842 |
Target: 5'- ---cAAGCGGCGCGCGCCGCCgCuGCc -3' miRNA: 3'- guuuUUUGCCGCGCGCGGCGG-GuCGc -5' |
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6900 | 3' | -57.1 | NC_001875.2 | + | 74358 | 0.83 | 0.11687 |
Target: 5'- uCAAAcuAGACGGCGUGCGCgGCCgCGGCGc -3' miRNA: 3'- -GUUU--UUUGCCGCGCGCGgCGG-GUCGC- -5' |
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6900 | 3' | -57.1 | NC_001875.2 | + | 90376 | 0.79 | 0.190464 |
Target: 5'- aCAAGAcACGccGCGCGCGCCGCaaCCGGCGc -3' miRNA: 3'- -GUUUUuUGC--CGCGCGCGGCG--GGUCGC- -5' |
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6900 | 3' | -57.1 | NC_001875.2 | + | 32791 | 0.78 | 0.215699 |
Target: 5'- ----cGugGGCGgGCGCCGCgCCGGCa -3' miRNA: 3'- guuuuUugCCGCgCGCGGCG-GGUCGc -5' |
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6900 | 3' | -57.1 | NC_001875.2 | + | 91195 | 0.78 | 0.243744 |
Target: 5'- gCAAcAGcCGGCGCGUGCgCGCCCAGUu -3' miRNA: 3'- -GUUuUUuGCCGCGCGCG-GCGGGUCGc -5' |
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6900 | 3' | -57.1 | NC_001875.2 | + | 58034 | 0.78 | 0.243744 |
Target: 5'- aCAAcguGGGCGGCGCGCuGCCGuUCCAGCc -3' miRNA: 3'- -GUUu--UUUGCCGCGCG-CGGC-GGGUCGc -5' |
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6900 | 3' | -57.1 | NC_001875.2 | + | 48495 | 0.77 | 0.270874 |
Target: 5'- ---uGAGCGcGUuaauggacuauuuugGCGCGCCGCCCGGCGc -3' miRNA: 3'- guuuUUUGC-CG---------------CGCGCGGCGGGUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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