miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6900 3' -57.1 NC_001875.2 + 65 0.68 0.714049
Target:  5'- ----cGGCGGCGaacgacaccaaugaCGCGCCGCCCGa-- -3'
miRNA:   3'- guuuuUUGCCGC--------------GCGCGGCGGGUcgc -5'
6900 3' -57.1 NC_001875.2 + 311 0.66 0.853311
Target:  5'- -------gGGCGCgcuuuGCGCCGCuuCCAGCc -3'
miRNA:   3'- guuuuuugCCGCG-----CGCGGCG--GGUCGc -5'
6900 3' -57.1 NC_001875.2 + 781 0.66 0.837188
Target:  5'- ----cGGCGGCGCGCGgaaCGUUCAugGCGu -3'
miRNA:   3'- guuuuUUGCCGCGCGCg--GCGGGU--CGC- -5'
6900 3' -57.1 NC_001875.2 + 1378 0.72 0.475755
Target:  5'- ---cGAACGGCGCGUGCUagcgguGCgUCAGCGg -3'
miRNA:   3'- guuuUUUGCCGCGCGCGG------CG-GGUCGC- -5'
6900 3' -57.1 NC_001875.2 + 1540 0.71 0.564109
Target:  5'- ---cGAACGGCGCGUGCUauuuuuagcgguGCgUCAGCGa -3'
miRNA:   3'- guuuUUUGCCGCGCGCGG------------CG-GGUCGC- -5'
6900 3' -57.1 NC_001875.2 + 1606 0.71 0.564109
Target:  5'- ---cGAACGGCGCGUGCUauuuuuagcgguGCgUCAGCGa -3'
miRNA:   3'- guuuUUUGCCGCGCGCGG------------CG-GGUCGC- -5'
6900 3' -57.1 NC_001875.2 + 1672 0.71 0.564109
Target:  5'- ---cGAACGGCGCGUGCUauuuuuagcgguGCgUCAGCGa -3'
miRNA:   3'- guuuUUUGCCGCGCGCGG------------CG-GGUCGC- -5'
6900 3' -57.1 NC_001875.2 + 1738 0.74 0.378094
Target:  5'- ---cGAACGGCGUGUGCUagcgguGCCuCAGCGg -3'
miRNA:   3'- guuuUUUGCCGCGCGCGG------CGG-GUCGC- -5'
6900 3' -57.1 NC_001875.2 + 1798 0.68 0.717046
Target:  5'- ---cGAACGGCGCGUGCUauuuuuagcgguGCgUCAGCa -3'
miRNA:   3'- guuuUUUGCCGCGCGCGG------------CG-GGUCGc -5'
6900 3' -57.1 NC_001875.2 + 2291 0.68 0.707033
Target:  5'- ----uGAUGcGCGCGCGCCGUggCCGcGCGc -3'
miRNA:   3'- guuuuUUGC-CGCGCGCGGCG--GGU-CGC- -5'
6900 3' -57.1 NC_001875.2 + 2663 0.67 0.802749
Target:  5'- -----uGCGGCGCcgGCGgCGCCUggGGCa -3'
miRNA:   3'- guuuuuUGCCGCG--CGCgGCGGG--UCGc -5'
6900 3' -57.1 NC_001875.2 + 2862 0.71 0.554024
Target:  5'- aCAGGguGGGCGaGCGCGUcauccGCuCGCCCAGCu -3'
miRNA:   3'- -GUUU--UUUGC-CGCGCG-----CG-GCGGGUCGc -5'
6900 3' -57.1 NC_001875.2 + 3002 0.68 0.745635
Target:  5'- ---cGGGCGGguugaagUGCGCGUCGCCguGCa -3'
miRNA:   3'- guuuUUUGCC-------GCGCGCGGCGGguCGc -5'
6900 3' -57.1 NC_001875.2 + 3069 0.74 0.378094
Target:  5'- ----cAGCGGCGCGCcgggGUCGCCCAcgGCGu -3'
miRNA:   3'- guuuuUUGCCGCGCG----CGGCGGGU--CGC- -5'
6900 3' -57.1 NC_001875.2 + 3871 0.67 0.793729
Target:  5'- -----cACGGCagcacCGCGCCGCCaAGCu -3'
miRNA:   3'- guuuuuUGCCGc----GCGCGGCGGgUCGc -5'
6900 3' -57.1 NC_001875.2 + 4427 0.71 0.534023
Target:  5'- ----cGGCGGCaugcugacGCGCGCCGCC-AGCa -3'
miRNA:   3'- guuuuUUGCCG--------CGCGCGGCGGgUCGc -5'
6900 3' -57.1 NC_001875.2 + 4519 0.71 0.534023
Target:  5'- gCGGAAAGCGGCGCacCGCCGgCU-GCGg -3'
miRNA:   3'- -GUUUUUUGCCGCGc-GCGGCgGGuCGC- -5'
6900 3' -57.1 NC_001875.2 + 5121 0.66 0.845347
Target:  5'- aCGGAAAggucacguccGCGGaCGUGCGCCGCUuCGGg- -3'
miRNA:   3'- -GUUUUU----------UGCC-GCGCGCGGCGG-GUCgc -5'
6900 3' -57.1 NC_001875.2 + 6384 0.67 0.793729
Target:  5'- -------gGGCacCGCGCgGCCCGGCa -3'
miRNA:   3'- guuuuuugCCGc-GCGCGgCGGGUCGc -5'
6900 3' -57.1 NC_001875.2 + 6999 0.69 0.696957
Target:  5'- ----uGugGGUGUGCuGCUGgCCGGCGg -3'
miRNA:   3'- guuuuUugCCGCGCG-CGGCgGGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.