miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6900 3' -57.1 NC_001875.2 + 20644 1.08 0.002224
Target:  5'- aCAAAAAACGGCGCGCGCCGCCCAGCGc -3'
miRNA:   3'- -GUUUUUUGCCGCGCGCGGCGGGUCGC- -5'
6900 3' -57.1 NC_001875.2 + 52348 0.88 0.050941
Target:  5'- uCAAGu-GCGGCGCGUGCCGCgCCAGCGu -3'
miRNA:   3'- -GUUUuuUGCCGCGCGCGGCG-GGUCGC- -5'
6900 3' -57.1 NC_001875.2 + 79643 0.83 0.105191
Target:  5'- -----cACGGCGCGCaGUCGCCCAGCa -3'
miRNA:   3'- guuuuuUGCCGCGCG-CGGCGGGUCGc -5'
6900 3' -57.1 NC_001875.2 + 88242 0.83 0.113842
Target:  5'- ---cAAGCGGCGCGCGCCGCCgCuGCc -3'
miRNA:   3'- guuuUUUGCCGCGCGCGGCGG-GuCGc -5'
6900 3' -57.1 NC_001875.2 + 74358 0.83 0.11687
Target:  5'- uCAAAcuAGACGGCGUGCGCgGCCgCGGCGc -3'
miRNA:   3'- -GUUU--UUUGCCGCGCGCGgCGG-GUCGC- -5'
6900 3' -57.1 NC_001875.2 + 73804 0.82 0.129749
Target:  5'- --uGGAACGGCaGCGCGCCGCCCA-CGu -3'
miRNA:   3'- guuUUUUGCCG-CGCGCGGCGGGUcGC- -5'
6900 3' -57.1 NC_001875.2 + 90376 0.79 0.190464
Target:  5'- aCAAGAcACGccGCGCGCGCCGCaaCCGGCGc -3'
miRNA:   3'- -GUUUUuUGC--CGCGCGCGGCG--GGUCGC- -5'
6900 3' -57.1 NC_001875.2 + 43605 0.79 0.200231
Target:  5'- ----cGGCGGCGCGCGCCGCUU-GCGc -3'
miRNA:   3'- guuuuUUGCCGCGCGCGGCGGGuCGC- -5'
6900 3' -57.1 NC_001875.2 + 32791 0.78 0.215699
Target:  5'- ----cGugGGCGgGCGCCGCgCCGGCa -3'
miRNA:   3'- guuuuUugCCGCgCGCGGCG-GGUCGc -5'
6900 3' -57.1 NC_001875.2 + 91195 0.78 0.243744
Target:  5'- gCAAcAGcCGGCGCGUGCgCGCCCAGUu -3'
miRNA:   3'- -GUUuUUuGCCGCGCGCG-GCGGGUCGc -5'
6900 3' -57.1 NC_001875.2 + 58034 0.78 0.243744
Target:  5'- aCAAcguGGGCGGCGCGCuGCCGuUCCAGCc -3'
miRNA:   3'- -GUUu--UUUGCCGCGCG-CGGC-GGGUCGc -5'
6900 3' -57.1 NC_001875.2 + 33039 0.77 0.255786
Target:  5'- -----cGCGGCGgGCGCCGCgCCGcGCGg -3'
miRNA:   3'- guuuuuUGCCGCgCGCGGCG-GGU-CGC- -5'
6900 3' -57.1 NC_001875.2 + 48495 0.77 0.270874
Target:  5'- ---uGAGCGcGUuaauggacuauuuugGCGCGCCGCCCGGCGc -3'
miRNA:   3'- guuuUUUGC-CG---------------CGCGCGGCGGGUCGC- -5'
6900 3' -57.1 NC_001875.2 + 81294 0.77 0.274756
Target:  5'- gCAAAAGACa-CGCGCGCCGCCggCGGCGc -3'
miRNA:   3'- -GUUUUUUGccGCGCGCGGCGG--GUCGC- -5'
6900 3' -57.1 NC_001875.2 + 66114 0.77 0.274756
Target:  5'- gCGGcgGGCGGCGaggcgGCGCCGCCC-GCGg -3'
miRNA:   3'- -GUUuuUUGCCGCg----CGCGGCGGGuCGC- -5'
6900 3' -57.1 NC_001875.2 + 60707 0.77 0.281326
Target:  5'- -----cGCGGcCGCGCugagGCCGCCCAGCc -3'
miRNA:   3'- guuuuuUGCC-GCGCG----CGGCGGGUCGc -5'
6900 3' -57.1 NC_001875.2 + 51195 0.76 0.294149
Target:  5'- ----cGACGGCGCgguucugGCGCCGCCCgucgAGCGc -3'
miRNA:   3'- guuuuUUGCCGCG-------CGCGGCGGG----UCGC- -5'
6900 3' -57.1 NC_001875.2 + 127404 0.76 0.294837
Target:  5'- cCAAAGugcuGGCGGCGCGCgucagcauGCCGCCguGCa -3'
miRNA:   3'- -GUUUU----UUGCCGCGCG--------CGGCGGguCGc -5'
6900 3' -57.1 NC_001875.2 + 37115 0.76 0.294837
Target:  5'- -------gGGCGCgGCGCCGCgCCGGCGu -3'
miRNA:   3'- guuuuuugCCGCG-CGCGGCG-GGUCGC- -5'
6900 3' -57.1 NC_001875.2 + 40780 0.76 0.308848
Target:  5'- ---uAAACGGCGUgcuGCGCgUGCCCAGCa -3'
miRNA:   3'- guuuUUUGCCGCG---CGCG-GCGGGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.