miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6902 3' -65.3 NC_001875.2 + 77251 0.66 0.452712
Target:  5'- --aCCGCGCCGUGgGC-GC-GCCgCCGg -3'
miRNA:   3'- uugGGCGCGGCGCaCGuCGaCGG-GGC- -5'
6902 3' -65.3 NC_001875.2 + 81302 0.66 0.452712
Target:  5'- cACgCGCGCCGcCG-GCGGC-GCCUCc -3'
miRNA:   3'- uUGgGCGCGGC-GCaCGUCGaCGGGGc -5'
6902 3' -65.3 NC_001875.2 + 33045 0.66 0.452712
Target:  5'- gGGCgCCGCGCCGCGcgGaUAGCguuccgcgcgGCUCCa -3'
miRNA:   3'- -UUG-GGCGCGGCGCa-C-GUCGa---------CGGGGc -5'
6902 3' -65.3 NC_001875.2 + 81337 0.66 0.452712
Target:  5'- cGugCCGCGCgGCGcGCuGgUGCCgCGc -3'
miRNA:   3'- -UugGGCGCGgCGCaCGuCgACGGgGC- -5'
6902 3' -65.3 NC_001875.2 + 44542 0.66 0.452712
Target:  5'- cAGCgUCGCGCgGCGUGCcgGGCUGCauugaaUCGa -3'
miRNA:   3'- -UUG-GGCGCGgCGCACG--UCGACGg-----GGC- -5'
6902 3' -65.3 NC_001875.2 + 72949 0.66 0.443936
Target:  5'- uAGCgCGCGUuCGCGgccUGCAaacGCUGCUCCGc -3'
miRNA:   3'- -UUGgGCGCG-GCGC---ACGU---CGACGGGGC- -5'
6902 3' -65.3 NC_001875.2 + 77043 0.66 0.443936
Target:  5'- --gCCGCGUCGCgGUGCuaguGCcGCCCgGu -3'
miRNA:   3'- uugGGCGCGGCG-CACGu---CGaCGGGgC- -5'
6902 3' -65.3 NC_001875.2 + 8778 0.66 0.443936
Target:  5'- cAGCCCGUGCUugGUG-GCaaacaAGCUGCCCa- -3'
miRNA:   3'- -UUGGGCGCGG--CGCaCG-----UCGACGGGgc -5'
6902 3' -65.3 NC_001875.2 + 66059 0.66 0.443936
Target:  5'- cGCgCCGaCGCCGCGcGCGuGCUcGCCCa- -3'
miRNA:   3'- uUG-GGC-GCGGCGCaCGU-CGA-CGGGgc -5'
6902 3' -65.3 NC_001875.2 + 124585 0.66 0.435258
Target:  5'- cGACCCGCGCCaggcCGcUGCAGCgcggaaagUGCaugaaCCGg -3'
miRNA:   3'- -UUGGGCGCGGc---GC-ACGUCG--------ACGg----GGC- -5'
6902 3' -65.3 NC_001875.2 + 92172 0.66 0.435258
Target:  5'- cAGCUCGcCGCCGCGcGCcGCcgGCCCa- -3'
miRNA:   3'- -UUGGGC-GCGGCGCaCGuCGa-CGGGgc -5'
6902 3' -65.3 NC_001875.2 + 10400 0.66 0.435258
Target:  5'- --gCCGCGCCGUGgcgcgGCAcccGCUGCacuaCCCa -3'
miRNA:   3'- uugGGCGCGGCGCa----CGU---CGACG----GGGc -5'
6902 3' -65.3 NC_001875.2 + 97790 0.66 0.435258
Target:  5'- --aCCGaaacgggguuuCGCUGCuGUGCAGCUGCCUgCGa -3'
miRNA:   3'- uugGGC-----------GCGGCG-CACGUCGACGGG-GC- -5'
6902 3' -65.3 NC_001875.2 + 126893 0.66 0.426678
Target:  5'- aGACCgagGCGgCGCaaaGUGUuaguGCUGCCCCGc -3'
miRNA:   3'- -UUGGg--CGCgGCG---CACGu---CGACGGGGC- -5'
6902 3' -65.3 NC_001875.2 + 111924 0.66 0.426678
Target:  5'- ---aCGgGCCG-GUGCAGCUGCCguaCGa -3'
miRNA:   3'- uuggGCgCGGCgCACGUCGACGGg--GC- -5'
6902 3' -65.3 NC_001875.2 + 84642 0.66 0.426678
Target:  5'- gAACCCGCG-CGUGUGCuccAGCaGCgCCu -3'
miRNA:   3'- -UUGGGCGCgGCGCACG---UCGaCGgGGc -5'
6902 3' -65.3 NC_001875.2 + 33966 0.66 0.4182
Target:  5'- uGCCCGUGCgGCGcGCAGCcGa-CCGg -3'
miRNA:   3'- uUGGGCGCGgCGCaCGUCGaCggGGC- -5'
6902 3' -65.3 NC_001875.2 + 39582 0.66 0.410657
Target:  5'- --gCCGCGCugcucagcacggucCGCGUGCacgggcuaaaguagcGGCcgGCCCCGg -3'
miRNA:   3'- uugGGCGCG--------------GCGCACG---------------UCGa-CGGGGC- -5'
6902 3' -65.3 NC_001875.2 + 124751 0.66 0.409825
Target:  5'- cGAgCCGCGCa-CGUaGUAGCUGCCgCCc -3'
miRNA:   3'- -UUgGGCGCGgcGCA-CGUCGACGG-GGc -5'
6902 3' -65.3 NC_001875.2 + 68840 0.66 0.409825
Target:  5'- uGCCUGgcggacggguCGCaCGCGUGC-GCgagUGCCCCGa -3'
miRNA:   3'- uUGGGC----------GCG-GCGCACGuCG---ACGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.