miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6919 5' -61.1 NC_001875.2 + 34083 0.66 0.627325
Target:  5'- -uGCCGCC--ACGCGCUugucgauCACCCCGu- -3'
miRNA:   3'- acCGGUGGuuUGCGCGG-------GUGGGGCuu -5'
6919 5' -61.1 NC_001875.2 + 107815 0.66 0.638447
Target:  5'- -aGCCACgCGAcCGCcgaGCCCGCgCCCGGu -3'
miRNA:   3'- acCGGUG-GUUuGCG---CGGGUG-GGGCUu -5'
6919 5' -61.1 NC_001875.2 + 36820 0.66 0.628336
Target:  5'- cGcGCCGCgGcaguuGCGCGCCCGCgCCa-- -3'
miRNA:   3'- aC-CGGUGgUu----UGCGCGGGUGgGGcuu -5'
6919 5' -61.1 NC_001875.2 + 17824 0.66 0.608131
Target:  5'- gGGgCACCAugugccucaugAugGUGCCgGCCgCCGAu -3'
miRNA:   3'- aCCgGUGGU-----------UugCGCGGgUGG-GGCUu -5'
6919 5' -61.1 NC_001875.2 + 37357 0.66 0.618228
Target:  5'- cGGCCGCgcgcucgugCGAACGCGCgCGCCgCUGc- -3'
miRNA:   3'- aCCGGUG---------GUUUGCGCGgGUGG-GGCuu -5'
6919 5' -61.1 NC_001875.2 + 41918 0.66 0.59805
Target:  5'- gUGGCC-CgCGGACGCGC-CGCCCUu-- -3'
miRNA:   3'- -ACCGGuG-GUUUGCGCGgGUGGGGcuu -5'
6919 5' -61.1 NC_001875.2 + 20657 0.66 0.618228
Target:  5'- cGcGCCGCCcAGCGCGCCCAa---GAAa -3'
miRNA:   3'- aC-CGGUGGuUUGCGCGGGUggggCUU- -5'
6919 5' -61.1 NC_001875.2 + 85215 0.66 0.638447
Target:  5'- gGGCCGCCGcGCgguaGCGCCgCAUgUCGAc -3'
miRNA:   3'- aCCGGUGGUuUG----CGCGG-GUGgGGCUu -5'
6919 5' -61.1 NC_001875.2 + 5830 0.66 0.638447
Target:  5'- aGcGCCGCCGaucugGACGCGCCCGCgUa--- -3'
miRNA:   3'- aC-CGGUGGU-----UUGCGCGGGUGgGgcuu -5'
6919 5' -61.1 NC_001875.2 + 120758 0.66 0.628336
Target:  5'- gGGCCGuguCCAgGGCGCGCgCCACgCCa-- -3'
miRNA:   3'- aCCGGU---GGU-UUGCGCG-GGUGgGGcuu -5'
6919 5' -61.1 NC_001875.2 + 55089 0.66 0.587995
Target:  5'- cGGCCAgCGcguccuUGUGCUCGuCCCCGAAu -3'
miRNA:   3'- aCCGGUgGUuu----GCGCGGGU-GGGGCUU- -5'
6919 5' -61.1 NC_001875.2 + 105681 0.66 0.608131
Target:  5'- cGGCCACCcacacacCGCGCCCGUCCa--- -3'
miRNA:   3'- aCCGGUGGuuu----GCGCGGGUGGGgcuu -5'
6919 5' -61.1 NC_001875.2 + 34697 0.66 0.587995
Target:  5'- gGGCCGCCccAACGgGUUCGCCauagCCGAGu -3'
miRNA:   3'- aCCGGUGGu-UUGCgCGGGUGG----GGCUU- -5'
6919 5' -61.1 NC_001875.2 + 82123 0.66 0.638447
Target:  5'- gUGGaCCuguuuuCCGAGgaCGCCCACCUCGAGu -3'
miRNA:   3'- -ACC-GGu-----GGUUUgcGCGGGUGGGGCUU- -5'
6919 5' -61.1 NC_001875.2 + 30940 0.66 0.638447
Target:  5'- uUGGCCGCaCAggucucgccAugGCGCCCACgCgCGc- -3'
miRNA:   3'- -ACCGGUG-GU---------UugCGCGGGUG-GgGCuu -5'
6919 5' -61.1 NC_001875.2 + 39363 0.66 0.587995
Target:  5'- cGcCCGCCGucuCGUGCCUACCCUGc- -3'
miRNA:   3'- aCcGGUGGUuu-GCGCGGGUGGGGCuu -5'
6919 5' -61.1 NC_001875.2 + 3940 0.66 0.587995
Target:  5'- cGGCCcgcuuguUCAAauGCGCGCCCACaaaCCGu- -3'
miRNA:   3'- aCCGGu------GGUU--UGCGCGGGUGg--GGCuu -5'
6919 5' -61.1 NC_001875.2 + 5127 0.66 0.638447
Target:  5'- aGGUCACguccgCGGACGUGCgCCGCUUCGGGu -3'
miRNA:   3'- aCCGGUG-----GUUUGCGCG-GGUGGGGCUU- -5'
6919 5' -61.1 NC_001875.2 + 45959 0.66 0.587995
Target:  5'- gUGGCCAaCCAggUGCGgCggUACCCCa-- -3'
miRNA:   3'- -ACCGGU-GGUuuGCGCgG--GUGGGGcuu -5'
6919 5' -61.1 NC_001875.2 + 9256 0.66 0.638447
Target:  5'- gGGCCaguaacgcaauACCAGGuccuCGCGCgCGuCCCCGAu -3'
miRNA:   3'- aCCGG-----------UGGUUU----GCGCGgGU-GGGGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.