miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6919 5' -61.1 NC_001875.2 + 3940 0.66 0.587995
Target:  5'- cGGCCcgcuuguUCAAauGCGCGCCCACaaaCCGu- -3'
miRNA:   3'- aCCGGu------GGUU--UGCGCGGGUGg--GGCuu -5'
6919 5' -61.1 NC_001875.2 + 4561 0.71 0.352052
Target:  5'- gGGCCGCCAgcAACGCGagcagCCGCaugCCCGAc -3'
miRNA:   3'- aCCGGUGGU--UUGCGCg----GGUG---GGGCUu -5'
6919 5' -61.1 NC_001875.2 + 5127 0.66 0.638447
Target:  5'- aGGUCACguccgCGGACGUGCgCCGCUUCGGGu -3'
miRNA:   3'- aCCGGUG-----GUUUGCGCG-GGUGGGGCUU- -5'
6919 5' -61.1 NC_001875.2 + 5288 0.72 0.300924
Target:  5'- aUGGCCG----ACGUGCCCGCgCCCGAc -3'
miRNA:   3'- -ACCGGUgguuUGCGCGGGUG-GGGCUu -5'
6919 5' -61.1 NC_001875.2 + 5830 0.66 0.638447
Target:  5'- aGcGCCGCCGaucugGACGCGCCCGCgUa--- -3'
miRNA:   3'- aC-CGGUGGU-----UUGCGCGGGUGgGgcuu -5'
6919 5' -61.1 NC_001875.2 + 7282 0.73 0.267413
Target:  5'- gUGuGCCGCCAAAgcgacccCGcCGCCgACCCCGAc -3'
miRNA:   3'- -AC-CGGUGGUUU-------GC-GCGGgUGGGGCUu -5'
6919 5' -61.1 NC_001875.2 + 9256 0.66 0.638447
Target:  5'- gGGCCaguaacgcaauACCAGGuccuCGCGCgCGuCCCCGAu -3'
miRNA:   3'- aCCGG-----------UGGUUU----GCGCGgGU-GGGGCUu -5'
6919 5' -61.1 NC_001875.2 + 9698 0.7 0.392177
Target:  5'- gGGCuCGCCGucguGCGCGCcggccgcgCCGCgCCCGAAg -3'
miRNA:   3'- aCCG-GUGGUu---UGCGCG--------GGUG-GGGCUU- -5'
6919 5' -61.1 NC_001875.2 + 12301 0.68 0.487316
Target:  5'- cGGCaCGCCGccgugugcguggucAACGCGCCCGgCCagCGAGa -3'
miRNA:   3'- aCCG-GUGGU--------------UUGCGCGGGUgGG--GCUU- -5'
6919 5' -61.1 NC_001875.2 + 13683 0.67 0.546176
Target:  5'- cGGCCACUAcggccucaaaacaGGCuuugaaaaacuuuGCGCCCGCCuuGGc -3'
miRNA:   3'- aCCGGUGGU-------------UUG-------------CGCGGGUGGggCUu -5'
6919 5' -61.1 NC_001875.2 + 14464 0.74 0.211043
Target:  5'- cGGCCAgCAAGCucgGCGCCU-CCCCGAc -3'
miRNA:   3'- aCCGGUgGUUUG---CGCGGGuGGGGCUu -5'
6919 5' -61.1 NC_001875.2 + 17824 0.66 0.608131
Target:  5'- gGGgCACCAugugccucaugAugGUGCCgGCCgCCGAu -3'
miRNA:   3'- aCCgGUGGU-----------UugCGCGGgUGG-GGCUu -5'
6919 5' -61.1 NC_001875.2 + 17829 0.69 0.444081
Target:  5'- cGGCCGCCAuGCGCGaggGCgCCGAAa -3'
miRNA:   3'- aCCGGUGGUuUGCGCgggUGgGGCUU- -5'
6919 5' -61.1 NC_001875.2 + 17962 0.68 0.518826
Target:  5'- cGGCaGCC-AGCGCGucCCCACUCUGGAu -3'
miRNA:   3'- aCCGgUGGuUUGCGC--GGGUGGGGCUU- -5'
6919 5' -61.1 NC_001875.2 + 18233 0.68 0.499626
Target:  5'- -uGCCGCC--GCG-GCCCGCCgCCGAc -3'
miRNA:   3'- acCGGUGGuuUGCgCGGGUGG-GGCUu -5'
6919 5' -61.1 NC_001875.2 + 18276 0.67 0.548148
Target:  5'- aUGGCgCGCCGuGCGCGaCCGCgCCGu- -3'
miRNA:   3'- -ACCG-GUGGUuUGCGCgGGUGgGGCuu -5'
6919 5' -61.1 NC_001875.2 + 18294 0.73 0.26804
Target:  5'- aGGCCGCUucGCGCGCUUauugGCCCCGc- -3'
miRNA:   3'- aCCGGUGGuuUGCGCGGG----UGGGGCuu -5'
6919 5' -61.1 NC_001875.2 + 20657 0.66 0.618228
Target:  5'- cGcGCCGCCcAGCGCGCCCAa---GAAa -3'
miRNA:   3'- aC-CGGUGGuUUGCGCGGGUggggCUU- -5'
6919 5' -61.1 NC_001875.2 + 21022 0.71 0.329411
Target:  5'- cGGCgCACC-AGCGCGUCCACCUgcgCGGc -3'
miRNA:   3'- aCCG-GUGGuUUGCGCGGGUGGG---GCUu -5'
6919 5' -61.1 NC_001875.2 + 22840 0.68 0.471439
Target:  5'- cGGCgGCaCGAcguACGCGUCCAgCCUGGAc -3'
miRNA:   3'- aCCGgUG-GUU---UGCGCGGGUgGGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.