miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6919 5' -61.1 NC_001875.2 + 34308 1.06 0.001177
Target:  5'- aUGGCCACCAAACGCGCCCACCCCGAAg -3'
miRNA:   3'- -ACCGGUGGUUUGCGCGGGUGGGGCUU- -5'
6919 5' -61.1 NC_001875.2 + 122041 0.8 0.091265
Target:  5'- -aGCCGCCGAugGCGCCgugcaaguaCACCCCGGAg -3'
miRNA:   3'- acCGGUGGUUugCGCGG---------GUGGGGCUU- -5'
6919 5' -61.1 NC_001875.2 + 55395 0.78 0.121453
Target:  5'- gGGCCGCC-AGCGCGCC--CCCCGAu -3'
miRNA:   3'- aCCGGUGGuUUGCGCGGguGGGGCUu -5'
6919 5' -61.1 NC_001875.2 + 110275 0.77 0.145259
Target:  5'- cUGGCCGCgGAGCGCGCgggCUGCCCCGu- -3'
miRNA:   3'- -ACCGGUGgUUUGCGCG---GGUGGGGCuu -5'
6919 5' -61.1 NC_001875.2 + 37502 0.76 0.160708
Target:  5'- cGGCCGgCGAcggugcggacgACGCGCCCugCCUGGAc -3'
miRNA:   3'- aCCGGUgGUU-----------UGCGCGGGugGGGCUU- -5'
6919 5' -61.1 NC_001875.2 + 48883 0.76 0.173252
Target:  5'- cGGUCGCCGagGACGCGCCC-CCgCGAc -3'
miRNA:   3'- aCCGGUGGU--UUGCGCGGGuGGgGCUu -5'
6919 5' -61.1 NC_001875.2 + 114743 0.75 0.19133
Target:  5'- cGGCCGCCAGugGCGCgcggCUugCCCGc- -3'
miRNA:   3'- aCCGGUGGUUugCGCG----GGugGGGCuu -5'
6919 5' -61.1 NC_001875.2 + 14464 0.74 0.211043
Target:  5'- cGGCCAgCAAGCucgGCGCCU-CCCCGAc -3'
miRNA:   3'- aCCGGUgGUUUG---CGCGGGuGGGGCUu -5'
6919 5' -61.1 NC_001875.2 + 109260 0.74 0.216238
Target:  5'- cGGCCgGCC-AACGCGCCgCGCCCgGGc -3'
miRNA:   3'- aCCGG-UGGuUUGCGCGG-GUGGGgCUu -5'
6919 5' -61.1 NC_001875.2 + 33629 0.74 0.23248
Target:  5'- cGGCCGCCGGGCaguugcagcCGCUCACCUCGAc -3'
miRNA:   3'- aCCGGUGGUUUGc--------GCGGGUGGGGCUu -5'
6919 5' -61.1 NC_001875.2 + 65667 0.73 0.238119
Target:  5'- gGGCCA-CAAACGCGaCCAgCCCGAu -3'
miRNA:   3'- aCCGGUgGUUUGCGCgGGUgGGGCUu -5'
6919 5' -61.1 NC_001875.2 + 66749 0.73 0.238119
Target:  5'- uUGGCCGCCucguuGAGCGCGuCCUugCCCa-- -3'
miRNA:   3'- -ACCGGUGG-----UUUGCGC-GGGugGGGcuu -5'
6919 5' -61.1 NC_001875.2 + 7282 0.73 0.267413
Target:  5'- gUGuGCCGCCAAAgcgacccCGcCGCCgACCCCGAc -3'
miRNA:   3'- -AC-CGGUGGUUU-------GC-GCGGgUGGGGCUu -5'
6919 5' -61.1 NC_001875.2 + 18294 0.73 0.26804
Target:  5'- aGGCCGCUucGCGCGCUUauugGCCCCGc- -3'
miRNA:   3'- aCCGGUGGuuUGCGCGGG----UGGGGCuu -5'
6919 5' -61.1 NC_001875.2 + 121691 0.72 0.273738
Target:  5'- cGGCCACCAcgcCGCGCUugcggaaCACgCCCGAAc -3'
miRNA:   3'- aCCGGUGGUuu-GCGCGG-------GUG-GGGCUU- -5'
6919 5' -61.1 NC_001875.2 + 70318 0.72 0.274377
Target:  5'- aUGGCCGCCAAGCGCGagCACgCgGAc -3'
miRNA:   3'- -ACCGGUGGUUUGCGCggGUGgGgCUu -5'
6919 5' -61.1 NC_001875.2 + 39757 0.72 0.274377
Target:  5'- gUGGCCAaccCCAcGCGCGCCUggaACgCCGAAa -3'
miRNA:   3'- -ACCGGU---GGUuUGCGCGGG---UGgGGCUU- -5'
6919 5' -61.1 NC_001875.2 + 124803 0.72 0.280833
Target:  5'- aGGCCGaCAAGCGCGCggCCACCUCGc- -3'
miRNA:   3'- aCCGGUgGUUUGCGCG--GGUGGGGCuu -5'
6919 5' -61.1 NC_001875.2 + 117427 0.72 0.287409
Target:  5'- -cGCCcauGCCGGugGCGCCCAuacgcuccCCCCGAc -3'
miRNA:   3'- acCGG---UGGUUugCGCGGGU--------GGGGCUu -5'
6919 5' -61.1 NC_001875.2 + 110922 0.72 0.300924
Target:  5'- cUGGCCAU--GGCGCGCCCACa-CGAAc -3'
miRNA:   3'- -ACCGGUGguUUGCGCGGGUGggGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.