miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6919 5' -61.1 NC_001875.2 + 35597 0.68 0.480748
Target:  5'- gUGGaCGCCAugcguucccugAACGCGCCCaACgCCGAc -3'
miRNA:   3'- -ACCgGUGGU-----------UUGCGCGGG-UGgGGCUu -5'
6919 5' -61.1 NC_001875.2 + 121393 0.7 0.375774
Target:  5'- cGGCCACCu-GCGUGCCCA--UCGAGu -3'
miRNA:   3'- aCCGGUGGuuUGCGCGGGUggGGCUU- -5'
6919 5' -61.1 NC_001875.2 + 45583 0.7 0.392177
Target:  5'- -cGCCGCCAAguccaGCGgGCCCgACUCCGGc -3'
miRNA:   3'- acCGGUGGUU-----UGCgCGGG-UGGGGCUu -5'
6919 5' -61.1 NC_001875.2 + 37975 0.69 0.426347
Target:  5'- cGGCgGCCu-GCGCGCUCAgCgCCGAc -3'
miRNA:   3'- aCCGgUGGuuUGCGCGGGUgG-GGCUu -5'
6919 5' -61.1 NC_001875.2 + 113404 0.69 0.426347
Target:  5'- cGcGCCACgCGGAcCGCGCCuCGCgCCGAGu -3'
miRNA:   3'- aC-CGGUG-GUUU-GCGCGG-GUGgGGCUU- -5'
6919 5' -61.1 NC_001875.2 + 111892 0.69 0.435162
Target:  5'- cGGCCggACCGuGCGCGCcggCCGCUCCGu- -3'
miRNA:   3'- aCCGG--UGGUuUGCGCG---GGUGGGGCuu -5'
6919 5' -61.1 NC_001875.2 + 128734 0.69 0.462224
Target:  5'- aGGUCugCGcGCGaGCCgCGCCCCGGc -3'
miRNA:   3'- aCCGGugGUuUGCgCGG-GUGGGGCUu -5'
6919 5' -61.1 NC_001875.2 + 37606 0.69 0.462224
Target:  5'- cGGCCGCaCGgcGGCGUGCUCGCCgaCGAc -3'
miRNA:   3'- aCCGGUG-GU--UUGCGCGGGUGGg-GCUu -5'
6919 5' -61.1 NC_001875.2 + 22840 0.68 0.471439
Target:  5'- cGGCgGCaCGAcguACGCGUCCAgCCUGGAc -3'
miRNA:   3'- aCCGgUG-GUU---UGCGCGGGUgGGGCUU- -5'
6919 5' -61.1 NC_001875.2 + 4561 0.71 0.352052
Target:  5'- gGGCCGCCAgcAACGCGagcagCCGCaugCCCGAc -3'
miRNA:   3'- aCCGGUGGU--UUGCGCg----GGUG---GGGCUu -5'
6919 5' -61.1 NC_001875.2 + 112365 0.71 0.329411
Target:  5'- cGaGCCGCCAGcaccaGCGCCCGagccugagcuCCCCGAGa -3'
miRNA:   3'- aC-CGGUGGUUug---CGCGGGU----------GGGGCUU- -5'
6919 5' -61.1 NC_001875.2 + 110922 0.72 0.300924
Target:  5'- cUGGCCAU--GGCGCGCCCACa-CGAAc -3'
miRNA:   3'- -ACCGGUGguUUGCGCGGGUGggGCUU- -5'
6919 5' -61.1 NC_001875.2 + 110275 0.77 0.145259
Target:  5'- cUGGCCGCgGAGCGCGCgggCUGCCCCGu- -3'
miRNA:   3'- -ACCGGUGgUUUGCGCG---GGUGGGGCuu -5'
6919 5' -61.1 NC_001875.2 + 37502 0.76 0.160708
Target:  5'- cGGCCGgCGAcggugcggacgACGCGCCCugCCUGGAc -3'
miRNA:   3'- aCCGGUgGUU-----------UGCGCGGGugGGGCUU- -5'
6919 5' -61.1 NC_001875.2 + 109260 0.74 0.216238
Target:  5'- cGGCCgGCC-AACGCGCCgCGCCCgGGc -3'
miRNA:   3'- aCCGG-UGGuUUGCGCGG-GUGGGgCUu -5'
6919 5' -61.1 NC_001875.2 + 66749 0.73 0.238119
Target:  5'- uUGGCCGCCucguuGAGCGCGuCCUugCCCa-- -3'
miRNA:   3'- -ACCGGUGG-----UUUGCGC-GGGugGGGcuu -5'
6919 5' -61.1 NC_001875.2 + 65667 0.73 0.238119
Target:  5'- gGGCCA-CAAACGCGaCCAgCCCGAu -3'
miRNA:   3'- aCCGGUgGUUUGCGCgGGUgGGGCUu -5'
6919 5' -61.1 NC_001875.2 + 18294 0.73 0.26804
Target:  5'- aGGCCGCUucGCGCGCUUauugGCCCCGc- -3'
miRNA:   3'- aCCGGUGGuuUGCGCGGG----UGGGGCuu -5'
6919 5' -61.1 NC_001875.2 + 39757 0.72 0.274377
Target:  5'- gUGGCCAaccCCAcGCGCGCCUggaACgCCGAAa -3'
miRNA:   3'- -ACCGGU---GGUuUGCGCGGG---UGgGGCUU- -5'
6919 5' -61.1 NC_001875.2 + 5288 0.72 0.300924
Target:  5'- aUGGCCG----ACGUGCCCGCgCCCGAc -3'
miRNA:   3'- -ACCGGUgguuUGCGCGGGUG-GGGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.