Results 1 - 20 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6923 | 5' | -62.3 | NC_001875.2 | + | 45214 | 0.66 | 0.596078 |
Target: 5'- gCUGGCGUacacgucGcGCGCgaacaGGCGgCGCGUCGc -3' miRNA: 3'- -GACCGCG-------C-CGUGa----CCGUgGCGCAGCa -5' |
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6923 | 5' | -62.3 | NC_001875.2 | + | 36581 | 0.66 | 0.606966 |
Target: 5'- -cGGCuguugcaaaauGCGGCGCagccGCugCGCGUCGc -3' miRNA: 3'- gaCCG-----------CGCCGUGac--CGugGCGCAGCa -5' |
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6923 | 5' | -62.3 | NC_001875.2 | + | 54351 | 0.66 | 0.584235 |
Target: 5'- -aGGaauGCGcGCGCUGGUACCGguucacauacagcaCGUCGg -3' miRNA: 3'- gaCCg--CGC-CGUGACCGUGGC--------------GCAGCa -5' |
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6923 | 5' | -62.3 | NC_001875.2 | + | 129545 | 0.66 | 0.606966 |
Target: 5'- gCUGcGCGCGGcCAC-GGCGCgCGCG-Ca- -3' miRNA: 3'- -GAC-CGCGCC-GUGaCCGUG-GCGCaGca -5' |
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6923 | 5' | -62.3 | NC_001875.2 | + | 29285 | 0.66 | 0.587191 |
Target: 5'- -cGGCGgGGCGC-GGUcguguGgCGUGUCGUg -3' miRNA: 3'- gaCCGCgCCGUGaCCG-----UgGCGCAGCA- -5' |
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6923 | 5' | -62.3 | NC_001875.2 | + | 44455 | 0.66 | 0.557774 |
Target: 5'- -aGGCGCcgucGGCGCaGuGCGCCaaGUCGUg -3' miRNA: 3'- gaCCGCG----CCGUGaC-CGUGGcgCAGCA- -5' |
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6923 | 5' | -62.3 | NC_001875.2 | + | 102870 | 0.66 | 0.597066 |
Target: 5'- -gGGCaGCGGCACUuuguccaccGGaaaGCCGCGgcCGUa -3' miRNA: 3'- gaCCG-CGCCGUGA---------CCg--UGGCGCa-GCA- -5' |
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6923 | 5' | -62.3 | NC_001875.2 | + | 43547 | 0.66 | 0.577347 |
Target: 5'- -cGGUGCGGaCAau--CACCGCGUCGc -3' miRNA: 3'- gaCCGCGCC-GUgaccGUGGCGCAGCa -5' |
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6923 | 5' | -62.3 | NC_001875.2 | + | 54021 | 0.66 | 0.567539 |
Target: 5'- -cGGCGCGcgcGUACcGGCACU-CGUCGUu -3' miRNA: 3'- gaCCGCGC---CGUGaCCGUGGcGCAGCA- -5' |
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6923 | 5' | -62.3 | NC_001875.2 | + | 90871 | 0.66 | 0.597066 |
Target: 5'- -cGGUGUugucgaacGUGCUGGCcgggGCCGCGUCGg -3' miRNA: 3'- gaCCGCGc-------CGUGACCG----UGGCGCAGCa -5' |
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6923 | 5' | -62.3 | NC_001875.2 | + | 94258 | 0.66 | 0.576364 |
Target: 5'- -cGGcCGCGGCGCUcGCGCCgGCGcauccacUCGa -3' miRNA: 3'- gaCC-GCGCCGUGAcCGUGG-CGC-------AGCa -5' |
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6923 | 5' | -62.3 | NC_001875.2 | + | 45160 | 0.66 | 0.587191 |
Target: 5'- aCUGGC-CaGGUACgucuccaGCACCGCGUUGa -3' miRNA: 3'- -GACCGcG-CCGUGac-----CGUGGCGCAGCa -5' |
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6923 | 5' | -62.3 | NC_001875.2 | + | 94301 | 0.66 | 0.567539 |
Target: 5'- uCUGGUGCuccagcagguugGGCGCguccaGGCAgggCGCGUCGUc -3' miRNA: 3'- -GACCGCG------------CCGUGa----CCGUg--GCGCAGCA- -5' |
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6923 | 5' | -62.3 | NC_001875.2 | + | 73865 | 0.66 | 0.577347 |
Target: 5'- uUGGUGCGGCGCgaaaACCGCGaaaCGg -3' miRNA: 3'- gACCGCGCCGUGaccgUGGCGCa--GCa -5' |
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6923 | 5' | -62.3 | NC_001875.2 | + | 17484 | 0.66 | 0.567539 |
Target: 5'- aUGGC-CaGCAagUUGGCggacGCCGCGUCGUu -3' miRNA: 3'- gACCGcGcCGU--GACCG----UGGCGCAGCA- -5' |
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6923 | 5' | -62.3 | NC_001875.2 | + | 53850 | 0.66 | 0.557774 |
Target: 5'- aUGGUcucGCGcaCGCUGGCACCGUcggccuguugGUCGUg -3' miRNA: 3'- gACCG---CGCc-GUGACCGUGGCG----------CAGCA- -5' |
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6923 | 5' | -62.3 | NC_001875.2 | + | 73790 | 0.66 | 0.557774 |
Target: 5'- gUGGCgGCGGCgGCUGgaacggcagcGCGCCGCccacguuguaGUCGUa -3' miRNA: 3'- gACCG-CGCCG-UGAC----------CGUGGCG----------CAGCA- -5' |
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6923 | 5' | -62.3 | NC_001875.2 | + | 96195 | 0.66 | 0.606966 |
Target: 5'- aUGGcCGCGcacuuGCGCUGcGCcagauaguCCGCGUCGg -3' miRNA: 3'- gACC-GCGC-----CGUGAC-CGu-------GGCGCAGCa -5' |
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6923 | 5' | -62.3 | NC_001875.2 | + | 41809 | 0.66 | 0.606966 |
Target: 5'- -cGGCaCGcGCGCcGGCGCCGCGgccaGUu -3' miRNA: 3'- gaCCGcGC-CGUGaCCGUGGCGCag--CA- -5' |
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6923 | 5' | -62.3 | NC_001875.2 | + | 114013 | 0.66 | 0.567539 |
Target: 5'- -cGGCGCccucGCGCaUGGCGgCCGCG-CGg -3' miRNA: 3'- gaCCGCGc---CGUG-ACCGU-GGCGCaGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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