miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6923 5' -62.3 NC_001875.2 + 37902 0.99 0.003487
Target:  5'- gCUGGCGCGGCACUGGCACCGCG-CGUg -3'
miRNA:   3'- -GACCGCGCCGUGACCGUGGCGCaGCA- -5'
6923 5' -62.3 NC_001875.2 + 51198 0.82 0.059272
Target:  5'- -cGGCGCGGUuCUGGCGCCGCccGUCGa -3'
miRNA:   3'- gaCCGCGCCGuGACCGUGGCG--CAGCa -5'
6923 5' -62.3 NC_001875.2 + 108569 0.77 0.122012
Target:  5'- -cGGCGCGGCgguGCUGGCGCUGCGcugccCGUc -3'
miRNA:   3'- gaCCGCGCCG---UGACCGUGGCGCa----GCA- -5'
6923 5' -62.3 NC_001875.2 + 125353 0.76 0.145459
Target:  5'- uUGGCGCGGCACUccgcguugGGCGCCGUaaUCGa -3'
miRNA:   3'- gACCGCGCCGUGA--------CCGUGGCGc-AGCa -5'
6923 5' -62.3 NC_001875.2 + 66039 0.76 0.160641
Target:  5'- uUGGCGCcGCGCaGGCACCGCG-CGc -3'
miRNA:   3'- gACCGCGcCGUGaCCGUGGCGCaGCa -5'
6923 5' -62.3 NC_001875.2 + 72566 0.75 0.172951
Target:  5'- -gGGCGCgGGCGCgGGCGCUGCGggugCGg -3'
miRNA:   3'- gaCCGCG-CCGUGaCCGUGGCGCa---GCa -5'
6923 5' -62.3 NC_001875.2 + 90029 0.75 0.172951
Target:  5'- aCUGGcCGCGGCGCcGGCGCgCGUGcCGg -3'
miRNA:   3'- -GACC-GCGCCGUGaCCGUG-GCGCaGCa -5'
6923 5' -62.3 NC_001875.2 + 75628 0.75 0.186094
Target:  5'- uUGGCGuCGGCGUUGGCGuCgGCGUCGg -3'
miRNA:   3'- gACCGC-GCCGUGACCGU-GgCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 69483 0.74 0.190668
Target:  5'- cCUGGCGCGcGacccaaACUGGCGCCGCGcCc- -3'
miRNA:   3'- -GACCGCGC-Cg-----UGACCGUGGCGCaGca -5'
6923 5' -62.3 NC_001875.2 + 57689 0.74 0.209958
Target:  5'- gCUGGCgGCGGCg--GGCGCCGCGcccUCGa -3'
miRNA:   3'- -GACCG-CGCCGugaCCGUGGCGC---AGCa -5'
6923 5' -62.3 NC_001875.2 + 79327 0.74 0.215037
Target:  5'- aUGaGCGCGGCGCugccuuUGGCGCCGCuguuuaccauGUCGg -3'
miRNA:   3'- gAC-CGCGCCGUG------ACCGUGGCG----------CAGCa -5'
6923 5' -62.3 NC_001875.2 + 41716 0.73 0.220221
Target:  5'- --uGCGCGGCGCU-GCGCgGCGUCGc -3'
miRNA:   3'- gacCGCGCCGUGAcCGUGgCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 95555 0.73 0.230908
Target:  5'- gUGGCuGCGGCGCauUGGCGCUcCGUUGUg -3'
miRNA:   3'- gACCG-CGCCGUG--ACCGUGGcGCAGCA- -5'
6923 5' -62.3 NC_001875.2 + 79492 0.73 0.230908
Target:  5'- gCUGGCGCGGCAC--GCGCCGCa---- -3'
miRNA:   3'- -GACCGCGCCGUGacCGUGGCGcagca -5'
6923 5' -62.3 NC_001875.2 + 81342 0.73 0.24203
Target:  5'- --cGCGCGGCgcGCUGGUGCCGCG-CGc -3'
miRNA:   3'- gacCGCGCCG--UGACCGUGGCGCaGCa -5'
6923 5' -62.3 NC_001875.2 + 75562 0.73 0.24203
Target:  5'- aUGGCGuCGGCguuggugauagcGCUGGCGuCgGCGUCGg -3'
miRNA:   3'- gACCGC-GCCG------------UGACCGU-GgCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 11965 0.73 0.247179
Target:  5'- -cGGCGCGuugcaaaGCACUGGCgACgGCGUUGg -3'
miRNA:   3'- gaCCGCGC-------CGUGACCG-UGgCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 117338 0.72 0.263777
Target:  5'- -cGGCGCGGCGCgGGCgaACCGgcgggccggcuggcCGUCGg -3'
miRNA:   3'- gaCCGCGCCGUGaCCG--UGGC--------------GCAGCa -5'
6923 5' -62.3 NC_001875.2 + 32788 0.72 0.265608
Target:  5'- -cGGCGUGG-GCgGGCGCCGCGcCGg -3'
miRNA:   3'- gaCCGCGCCgUGaCCGUGGCGCaGCa -5'
6923 5' -62.3 NC_001875.2 + 50497 0.72 0.271786
Target:  5'- gUGcGCGCGGCACcagcGCGCCGCG-CGg -3'
miRNA:   3'- gAC-CGCGCCGUGac--CGUGGCGCaGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.