miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6923 5' -62.3 NC_001875.2 + 75286 0.7 0.370506
Target:  5'- aUGGCGuCGGCGaUGGCGuCgGCGUUGg -3'
miRNA:   3'- gACCGC-GCCGUgACCGU-GgCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 65769 0.72 0.284488
Target:  5'- -cGuGCGCGGCGggcGGCGgCGCGUCGUc -3'
miRNA:   3'- gaC-CGCGCCGUga-CCGUgGCGCAGCA- -5'
6923 5' -62.3 NC_001875.2 + 76684 0.71 0.304412
Target:  5'- -aGGUGCGGCugUauuuguguccGGUGCCGcCGUCGg -3'
miRNA:   3'- gaCCGCGCCGugA----------CCGUGGC-GCAGCa -5'
6923 5' -62.3 NC_001875.2 + 75239 0.71 0.304412
Target:  5'- -cGGCGaCGGCGaUGGCgGCgGCGUCGg -3'
miRNA:   3'- gaCCGC-GCCGUgACCG-UGgCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 85303 0.7 0.339964
Target:  5'- -cGGCGCgGGCGCgGGCauuGCCGCGggCGc -3'
miRNA:   3'- gaCCGCG-CCGUGaCCG---UGGCGCa-GCa -5'
6923 5' -62.3 NC_001875.2 + 110693 0.7 0.339964
Target:  5'- -cGGcCGCGGag--GGCGCCGCGuUCGUg -3'
miRNA:   3'- gaCC-GCGCCgugaCCGUGGCGC-AGCA- -5'
6923 5' -62.3 NC_001875.2 + 37107 0.7 0.347425
Target:  5'- -gGGUGUgcgGGCGC-GGCGCCGCGcCGg -3'
miRNA:   3'- gaCCGCG---CCGUGaCCGUGGCGCaGCa -5'
6923 5' -62.3 NC_001875.2 + 1269 0.7 0.361923
Target:  5'- uUGGCGCGcauugaaGCGCU-GUugCGCGUCGa -3'
miRNA:   3'- gACCGCGC-------CGUGAcCGugGCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 5746 0.7 0.362697
Target:  5'- aUGGCgacGCGGCGCUugcuuuGCACCGCGUUc- -3'
miRNA:   3'- gACCG---CGCCGUGAc-----CGUGGCGCAGca -5'
6923 5' -62.3 NC_001875.2 + 32788 0.72 0.265608
Target:  5'- -cGGCGUGG-GCgGGCGCCGCGcCGg -3'
miRNA:   3'- gaCCGCGCCgUGaCCGUGGCGCaGCa -5'
6923 5' -62.3 NC_001875.2 + 117338 0.72 0.263777
Target:  5'- -cGGCGCGGCGCgGGCgaACCGgcgggccggcuggcCGUCGg -3'
miRNA:   3'- gaCCGCGCCGUGaCCG--UGGC--------------GCAGCa -5'
6923 5' -62.3 NC_001875.2 + 11965 0.73 0.247179
Target:  5'- -cGGCGCGuugcaaaGCACUGGCgACgGCGUUGg -3'
miRNA:   3'- gaCCGCGC-------CGUGACCG-UGgCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 108569 0.77 0.122012
Target:  5'- -cGGCGCGGCgguGCUGGCGCUGCGcugccCGUc -3'
miRNA:   3'- gaCCGCGCCG---UGACCGUGGCGCa----GCA- -5'
6923 5' -62.3 NC_001875.2 + 66039 0.76 0.160641
Target:  5'- uUGGCGCcGCGCaGGCACCGCG-CGc -3'
miRNA:   3'- gACCGCGcCGUGaCCGUGGCGCaGCa -5'
6923 5' -62.3 NC_001875.2 + 72566 0.75 0.172951
Target:  5'- -gGGCGCgGGCGCgGGCGCUGCGggugCGg -3'
miRNA:   3'- gaCCGCG-CCGUGaCCGUGGCGCa---GCa -5'
6923 5' -62.3 NC_001875.2 + 75628 0.75 0.186094
Target:  5'- uUGGCGuCGGCGUUGGCGuCgGCGUCGg -3'
miRNA:   3'- gACCGC-GCCGUGACCGU-GgCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 41716 0.73 0.220221
Target:  5'- --uGCGCGGCGCU-GCGCgGCGUCGc -3'
miRNA:   3'- gacCGCGCCGUGAcCGUGgCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 79492 0.73 0.230908
Target:  5'- gCUGGCGCGGCAC--GCGCCGCa---- -3'
miRNA:   3'- -GACCGCGCCGUGacCGUGGCGcagca -5'
6923 5' -62.3 NC_001875.2 + 75562 0.73 0.24203
Target:  5'- aUGGCGuCGGCguuggugauagcGCUGGCGuCgGCGUCGg -3'
miRNA:   3'- gACCGC-GCCG------------UGACCGU-GgCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 81342 0.73 0.24203
Target:  5'- --cGCGCGGCgcGCUGGUGCCGCG-CGc -3'
miRNA:   3'- gacCGCGCCG--UGACCGUGGCGCaGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.