miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6923 5' -62.3 NC_001875.2 + 1032 0.68 0.481823
Target:  5'- gUGGCGgGGCcCgaGGCGCacaGCGUUGg -3'
miRNA:   3'- gACCGCgCCGuGa-CCGUGg--CGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 1146 0.67 0.528792
Target:  5'- -aGGcCGUGGCAaaagUGGgGCCGCGUgcCGUg -3'
miRNA:   3'- gaCC-GCGCCGUg---ACCgUGGCGCA--GCA- -5'
6923 5' -62.3 NC_001875.2 + 1269 0.7 0.361923
Target:  5'- uUGGCGCGcauugaaGCGCU-GUugCGCGUCGa -3'
miRNA:   3'- gACCGCGC-------CGUGAcCGugGCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 3539 0.67 0.548058
Target:  5'- uUGGCGCacguCACcGGCGCCGUGgcgCGUc -3'
miRNA:   3'- gACCGCGcc--GUGaCCGUGGCGCa--GCA- -5'
6923 5' -62.3 NC_001875.2 + 3864 0.66 0.597066
Target:  5'- --cGUGUGGCACggcaGCACCGCGcCGc -3'
miRNA:   3'- gacCGCGCCGUGac--CGUGGCGCaGCa -5'
6923 5' -62.3 NC_001875.2 + 5746 0.7 0.362697
Target:  5'- aUGGCgacGCGGCGCUugcuuuGCACCGCGUUc- -3'
miRNA:   3'- gACCG---CGCCGUGAc-----CGUGGCGCAGca -5'
6923 5' -62.3 NC_001875.2 + 8515 0.68 0.472669
Target:  5'- -gGGCGUGcGCuCUGcCugCGCGUCGUu -3'
miRNA:   3'- gaCCGCGC-CGuGACcGugGCGCAGCA- -5'
6923 5' -62.3 NC_001875.2 + 9771 0.7 0.378429
Target:  5'- -aGGCcaagcgcacGCGGCACauccgGGCACUGCG-CGUg -3'
miRNA:   3'- gaCCG---------CGCCGUGa----CCGUGGCGCaGCA- -5'
6923 5' -62.3 NC_001875.2 + 11077 0.67 0.544186
Target:  5'- uUGGCGUGGCGCgcgcccuggacacGGcCGCCGUcUCGg -3'
miRNA:   3'- gACCGCGCCGUGa------------CC-GUGGCGcAGCa -5'
6923 5' -62.3 NC_001875.2 + 11965 0.73 0.247179
Target:  5'- -cGGCGCGuugcaaaGCACUGGCgACgGCGUUGg -3'
miRNA:   3'- gaCCGCGC-------CGUGACCG-UGgCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 13806 0.67 0.519252
Target:  5'- gUGGCGCGGCGUUGccgucGCACUG-GUCGc -3'
miRNA:   3'- gACCGCGCCGUGAC-----CGUGGCgCAGCa -5'
6923 5' -62.3 NC_001875.2 + 14936 0.68 0.463603
Target:  5'- -cGGUGCGGa--UGGCGuuGgCGUCGUg -3'
miRNA:   3'- gaCCGCGCCgugACCGUggC-GCAGCA- -5'
6923 5' -62.3 NC_001875.2 + 17484 0.66 0.567539
Target:  5'- aUGGC-CaGCAagUUGGCggacGCCGCGUCGUu -3'
miRNA:   3'- gACCGcGcCGU--GACCG----UGGCGCAGCA- -5'
6923 5' -62.3 NC_001875.2 + 18648 0.68 0.491062
Target:  5'- gCUGGUG-GGCACgucGCAgCGCGUCa- -3'
miRNA:   3'- -GACCGCgCCGUGac-CGUgGCGCAGca -5'
6923 5' -62.3 NC_001875.2 + 19864 0.67 0.538395
Target:  5'- -cGGCcgcgucGCGGCGCgGGCGCCGUuugCGa -3'
miRNA:   3'- gaCCG------CGCCGUGaCCGUGGCGca-GCa -5'
6923 5' -62.3 NC_001875.2 + 22583 0.67 0.509781
Target:  5'- -gGGCGCGGCGCguUGGCcgGCCGgcUGUaCGg -3'
miRNA:   3'- gaCCGCGCCGUG--ACCG--UGGC--GCA-GCa -5'
6923 5' -62.3 NC_001875.2 + 25981 0.67 0.506954
Target:  5'- -aGGCguacgcauacaacgGCGGCucGCUGGaccccaacaGCCGCGUCGa -3'
miRNA:   3'- gaCCG--------------CGCCG--UGACCg--------UGGCGCAGCa -5'
6923 5' -62.3 NC_001875.2 + 29285 0.66 0.587191
Target:  5'- -cGGCGgGGCGC-GGUcguguGgCGUGUCGUg -3'
miRNA:   3'- gaCCGCgCCGUGaCCG-----UgGCGCAGCA- -5'
6923 5' -62.3 NC_001875.2 + 29799 0.67 0.509781
Target:  5'- aCUGuGCG-GGCGCUGGCGgCGCauggGUCa- -3'
miRNA:   3'- -GAC-CGCgCCGUGACCGUgGCG----CAGca -5'
6923 5' -62.3 NC_001875.2 + 31248 0.66 0.597066
Target:  5'- -cGGC-CGGCGCccGGC-CCGCGUaCGc -3'
miRNA:   3'- gaCCGcGCCGUGa-CCGuGGCGCA-GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.