miRNA display CGI


Results 1 - 20 of 340 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6927 3' -65.1 NC_001875.2 + 31598 0.66 0.445632
Target:  5'- -gUCCGgCGCCGUGCC-GUGGGCGgaCCa -3'
miRNA:   3'- cuGGGCgGCGGCGUGGuCGUCCGC--GG- -5'
6927 3' -65.1 NC_001875.2 + 91713 0.66 0.481084
Target:  5'- aGCCCauggaggugacgGCCGUCggcaaguacaGCGCCAGCcaguGGCGCg -3'
miRNA:   3'- cUGGG------------CGGCGG----------CGUGGUCGu---CCGCGg -5'
6927 3' -65.1 NC_001875.2 + 36655 0.66 0.445632
Target:  5'- uGGCCgCGUCGUgCGCGCUgAGCucgGGGCGCg -3'
miRNA:   3'- -CUGG-GCGGCG-GCGUGG-UCG---UCCGCGg -5'
6927 3' -65.1 NC_001875.2 + 17111 0.66 0.428462
Target:  5'- cACUgGCgGCCGCAUaagcaAGCAuuuGGCGUCg -3'
miRNA:   3'- cUGGgCGgCGGCGUGg----UCGU---CCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 61491 0.66 0.428462
Target:  5'- cACCCuuUUG-CGCGCCGGCucGGCGCCg -3'
miRNA:   3'- cUGGGc-GGCgGCGUGGUCGu-CCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 107824 0.66 0.428462
Target:  5'- --aCCGCCGagcCCGCGCC--CGGuGCGCCu -3'
miRNA:   3'- cugGGCGGC---GGCGUGGucGUC-CGCGG- -5'
6927 3' -65.1 NC_001875.2 + 90032 0.66 0.436999
Target:  5'- aGCUCGCCG-CGCGCCAuguuGCAGcacuacaacgaGUGCCu -3'
miRNA:   3'- cUGGGCGGCgGCGUGGU----CGUC-----------CGCGG- -5'
6927 3' -65.1 NC_001875.2 + 11938 0.66 0.444765
Target:  5'- cGGCgCGCCGaCUGUgcgcgcgACCGGC-GGCGCg -3'
miRNA:   3'- -CUGgGCGGC-GGCG-------UGGUCGuCCGCGg -5'
6927 3' -65.1 NC_001875.2 + 44695 0.66 0.434427
Target:  5'- uGACCuCGCUGCCcacgcgguacuugaGCACCGGCAG-CGa- -3'
miRNA:   3'- -CUGG-GCGGCGG--------------CGUGGUCGUCcGCgg -5'
6927 3' -65.1 NC_001875.2 + 4766 0.66 0.434427
Target:  5'- uGCUgGCCGCCGUuggccGCggcuuugacuauuaCAGCcGGCGCCc -3'
miRNA:   3'- cUGGgCGGCGGCG-----UG--------------GUCGuCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 100152 0.66 0.428462
Target:  5'- --gCCGCUGUCGCGgugaucaCGGUGGGCGCg -3'
miRNA:   3'- cugGGCGGCGGCGUg------GUCGUCCGCGg -5'
6927 3' -65.1 NC_001875.2 + 96330 0.66 0.436999
Target:  5'- aACgCGCgGCCGCccguuGCCGGCAGuuGUCa -3'
miRNA:   3'- cUGgGCGgCGGCG-----UGGUCGUCcgCGG- -5'
6927 3' -65.1 NC_001875.2 + 38434 0.66 0.427614
Target:  5'- aGCCCGCCuacgaaaGCagcaaGUGCCGGCGcGCGCUa -3'
miRNA:   3'- cUGGGCGG-------CGg----CGUGGUCGUcCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 119053 0.66 0.436999
Target:  5'- -gUCCGgCGUgCGCAUguGCGcGGCGCCc -3'
miRNA:   3'- cuGGGCgGCG-GCGUGguCGU-CCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 52521 0.66 0.434427
Target:  5'- aGGCagCGCCGCgcucaucgaaagcaCGCGCCAGUAuGCGCg -3'
miRNA:   3'- -CUGg-GCGGCG--------------GCGUGGUCGUcCGCGg -5'
6927 3' -65.1 NC_001875.2 + 42847 0.66 0.428462
Target:  5'- aGCgCGCaaaucCGgCGCGCC-GCAGGCGCa -3'
miRNA:   3'- cUGgGCG-----GCgGCGUGGuCGUCCGCGg -5'
6927 3' -65.1 NC_001875.2 + 69023 0.66 0.445632
Target:  5'- uGGCgCGCUGCCcCgACCAGCAGGUcuuuGaCCg -3'
miRNA:   3'- -CUGgGCGGCGGcG-UGGUCGUCCG----C-GG- -5'
6927 3' -65.1 NC_001875.2 + 10630 0.66 0.428462
Target:  5'- aACCgGCCgguGCCGC-CCAGCgugcaguacuuGGGCGgCg -3'
miRNA:   3'- cUGGgCGG---CGGCGuGGUCG-----------UCCGCgG- -5'
6927 3' -65.1 NC_001875.2 + 85341 0.66 0.428462
Target:  5'- cGCCCGCCgcgaacGCCGaCGCCguGGC-GGCGUUc -3'
miRNA:   3'- cUGGGCGG------CGGC-GUGG--UCGuCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 111926 0.66 0.428462
Target:  5'- gGGCCggugcaGCUGCCGUACgAGCAGcuaaaaGCGCa -3'
miRNA:   3'- -CUGGg-----CGGCGGCGUGgUCGUC------CGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.