miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6927 3' -65.1 NC_001875.2 + 81355 0.73 0.167615
Target:  5'- gGugCCGCgCGCaCGCGCCGGCc-GCGUCg -3'
miRNA:   3'- -CugGGCG-GCG-GCGUGGUCGucCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 18172 0.74 0.137878
Target:  5'- cGACgCCGCCacugugGCgGUGCCGGCGGGCGUa -3'
miRNA:   3'- -CUG-GGCGG------CGgCGUGGUCGUCCGCGg -5'
6927 3' -65.1 NC_001875.2 + 48851 0.74 0.141312
Target:  5'- aGCCCGCCGgCG-ACgAGC-GGCGCCg -3'
miRNA:   3'- cUGGGCGGCgGCgUGgUCGuCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 37093 0.74 0.144824
Target:  5'- cGACaCCGCCGCgugggUGUGCgGGCGcGGCGCCg -3'
miRNA:   3'- -CUG-GGCGGCG-----GCGUGgUCGU-CCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 92819 0.74 0.148416
Target:  5'- uGCCgCGCCGCgguCGCAUCAGUaAGGCGCa -3'
miRNA:   3'- cUGG-GCGGCG---GCGUGGUCG-UCCGCGg -5'
6927 3' -65.1 NC_001875.2 + 41919 0.74 0.148416
Target:  5'- uGGCCCGCgGaCGCGCCGcccuuuauauGCGcGGCGCCa -3'
miRNA:   3'- -CUGGGCGgCgGCGUGGU----------CGU-CCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 128696 0.74 0.148416
Target:  5'- cGCCCGaCGCCGCguccGCgCAGCGGGCuucGCCg -3'
miRNA:   3'- cUGGGCgGCGGCG----UG-GUCGUCCG---CGG- -5'
6927 3' -65.1 NC_001875.2 + 51920 0.74 0.152088
Target:  5'- uGAUgCCGCCGCUGCA-CAGCGugcGGCGCUa -3'
miRNA:   3'- -CUG-GGCGGCGGCGUgGUCGU---CCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 97880 0.73 0.159294
Target:  5'- --gCUGCgCGCCGCACgGGCAcguugcgggcgucGGCGCCg -3'
miRNA:   3'- cugGGCG-GCGGCGUGgUCGU-------------CCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 40852 0.74 0.131239
Target:  5'- cGCUCGCCaagaCgCGCACC-GCGGGCGCCa -3'
miRNA:   3'- cUGGGCGGc---G-GCGUGGuCGUCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 108675 0.75 0.128032
Target:  5'- uGCCCgcaGCCGCCGUGCCcGCAGcCGCCc -3'
miRNA:   3'- cUGGG---CGGCGGCGUGGuCGUCcGCGG- -5'
6927 3' -65.1 NC_001875.2 + 32793 0.75 0.113056
Target:  5'- uGGgCgGgCGCCGCGCCGGCAagcucggcgaacGGCGCCg -3'
miRNA:   3'- -CUgGgCgGCGGCGUGGUCGU------------CCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 99369 0.86 0.018008
Target:  5'- cGCCCGCCaaguggccaaagcGCCGCACCGGC-GGCGCCa -3'
miRNA:   3'- cUGGGCGG-------------CGGCGUGGUCGuCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 29271 0.81 0.04509
Target:  5'- --gCCGCCGaCCGCGCCGGCGgGGCGCg -3'
miRNA:   3'- cugGGCGGC-GGCGUGGUCGU-CCGCGg -5'
6927 3' -65.1 NC_001875.2 + 49858 0.78 0.077407
Target:  5'- cGCCgGCCGgCGCGCCuuGCcGGCGCCa -3'
miRNA:   3'- cUGGgCGGCgGCGUGGu-CGuCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 58236 0.76 0.094827
Target:  5'- --gCCGCCGCCGCAaCAGUuGGCGCUc -3'
miRNA:   3'- cugGGCGGCGGCGUgGUCGuCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 45469 0.76 0.09973
Target:  5'- cGCCCGCaGCCGCGCgucUAGCGcGGUGCCa -3'
miRNA:   3'- cUGGGCGgCGGCGUG---GUCGU-CCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 90379 0.76 0.104873
Target:  5'- aGACaCGCCGCgCGCGCC-GCAaccGGCGCCu -3'
miRNA:   3'- -CUGgGCGGCG-GCGUGGuCGU---CCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 82500 0.76 0.105931
Target:  5'- cGGCCCGCCGCCcacgcugcaggaacuGUGCCAGUuucAGGUGCa -3'
miRNA:   3'- -CUGGGCGGCGG---------------CGUGGUCG---UCCGCGg -5'
6927 3' -65.1 NC_001875.2 + 29049 0.76 0.110264
Target:  5'- uACUCGCagcgGUCGUACCAGCGGGCGUg -3'
miRNA:   3'- cUGGGCGg---CGGCGUGGUCGUCCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.