miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6927 3' -65.1 NC_001875.2 + 96 0.67 0.406736
Target:  5'- cGAUCCGCCGCCggcccaauGCACCAuucaaauauagucguGUcGGCugGCCa -3'
miRNA:   3'- -CUGGGCGGCGG--------CGUGGU---------------CGuCCG--CGG- -5'
6927 3' -65.1 NC_001875.2 + 329 0.68 0.348839
Target:  5'- -uUCCaGCCGCUGCACC-GC--GCGCCg -3'
miRNA:   3'- cuGGG-CGGCGGCGUGGuCGucCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 1540 0.67 0.411689
Target:  5'- cGCCCGCUauuuuGCCGCaaACCAcGCAaccgccGGCGaCCg -3'
miRNA:   3'- cUGGGCGG-----CGGCG--UGGU-CGU------CCGC-GG- -5'
6927 3' -65.1 NC_001875.2 + 1739 0.66 0.463181
Target:  5'- cGCgCCGCCGCCGcCGCCAuuuccGUcGGCGg- -3'
miRNA:   3'- cUG-GGCGGCGGC-GUGGU-----CGuCCGCgg -5'
6927 3' -65.1 NC_001875.2 + 1874 0.67 0.395328
Target:  5'- --gCCGCCGCCGcCGCCGccGCcGcCGCCa -3'
miRNA:   3'- cugGGCGGCGGC-GUGGU--CGuCcGCGG- -5'
6927 3' -65.1 NC_001875.2 + 2300 0.66 0.427614
Target:  5'- cGCgCCGUgGCCGCGCgCAGCucGGCcagcucgGCCu -3'
miRNA:   3'- cUG-GGCGgCGGCGUG-GUCGu-CCG-------CGG- -5'
6927 3' -65.1 NC_001875.2 + 2650 0.68 0.334234
Target:  5'- gGACaCGUCuacuuGCgGCGCCGGC-GGCGCCu -3'
miRNA:   3'- -CUGgGCGG-----CGgCGUGGUCGuCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 3141 0.69 0.313175
Target:  5'- aGCCCGCUGCgCGgACgCGGCgucGGGCGgCg -3'
miRNA:   3'- cUGGGCGGCG-GCgUG-GUCG---UCCGCgG- -5'
6927 3' -65.1 NC_001875.2 + 3438 0.7 0.274114
Target:  5'- cGCUgGUCGUCGCACCAaacGCAGGacaGCUg -3'
miRNA:   3'- cUGGgCGGCGGCGUGGU---CGUCCg--CGG- -5'
6927 3' -65.1 NC_001875.2 + 3819 0.68 0.371588
Target:  5'- cACCgGCCGUCGUcggcgcacGCCGGCGcGGCcgcaGCCu -3'
miRNA:   3'- cUGGgCGGCGGCG--------UGGUCGU-CCG----CGG- -5'
6927 3' -65.1 NC_001875.2 + 4441 0.68 0.348098
Target:  5'- cGCgCGCCGCCaGCACUuuggccaGGCucuGaGCGCCg -3'
miRNA:   3'- cUGgGCGGCGG-CGUGG-------UCGu--C-CGCGG- -5'
6927 3' -65.1 NC_001875.2 + 4481 0.67 0.411689
Target:  5'- cGACa-GCCuCaaaGUACuCGGCGGGCGCCg -3'
miRNA:   3'- -CUGggCGGcGg--CGUG-GUCGUCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 4766 0.66 0.434427
Target:  5'- uGCUgGCCGCCGUuggccGCggcuuugacuauuaCAGCcGGCGCCc -3'
miRNA:   3'- cUGGgCGGCGGCG-----UG--------------GUCGuCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 5532 0.69 0.286684
Target:  5'- cGCCgGCCGCCGUugaGGCgcgcguuaAGGUGCCa -3'
miRNA:   3'- cUGGgCGGCGGCGuggUCG--------UCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 5849 0.68 0.334234
Target:  5'- cGCCCGCguaGCaguGCACCAGCAcGCGUUu -3'
miRNA:   3'- cUGGGCGg--CGg--CGUGGUCGUcCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 5916 0.68 0.369268
Target:  5'- cGCCgGCauggcguuggguagCGCCGCGCaGGUGGGCGCg -3'
miRNA:   3'- cUGGgCG--------------GCGGCGUGgUCGUCCGCGg -5'
6927 3' -65.1 NC_001875.2 + 6488 0.66 0.47209
Target:  5'- cGCCCaacGCggagUGCCGCGCCAacacGCuGGcCGCCg -3'
miRNA:   3'- cUGGG---CG----GCGGCGUGGU----CGuCC-GCGG- -5'
6927 3' -65.1 NC_001875.2 + 6799 0.71 0.228229
Target:  5'- cGACCCGCagaucggGUCGCugaACCAGCu-GCGCCg -3'
miRNA:   3'- -CUGGGCGg------CGGCG---UGGUCGucCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 8124 0.66 0.445632
Target:  5'- uGGCCaCGCUGCUGUACUuGUAGGUaaGCg -3'
miRNA:   3'- -CUGG-GCGGCGGCGUGGuCGUCCG--CGg -5'
6927 3' -65.1 NC_001875.2 + 8495 0.71 0.217821
Target:  5'- cGCCgGgCGCCGUcCguGUGGGCGCCg -3'
miRNA:   3'- cUGGgCgGCGGCGuGguCGUCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.