miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6927 3' -65.1 NC_001875.2 + 39962 1.09 0.00034
Target:  5'- cGACCCGCCGCCGCACCAGCAGGCGCCc -3'
miRNA:   3'- -CUGGGCGGCGGCGUGGUCGUCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 99369 0.86 0.018008
Target:  5'- cGCCCGCCaaguggccaaagcGCCGCACCGGC-GGCGCCa -3'
miRNA:   3'- cUGGGCGG-------------CGGCGUGGUCGuCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 29271 0.81 0.04509
Target:  5'- --gCCGCCGaCCGCGCCGGCGgGGCGCg -3'
miRNA:   3'- cugGGCGGC-GGCGUGGUCGU-CCGCGg -5'
6927 3' -65.1 NC_001875.2 + 47515 0.8 0.054044
Target:  5'- cACUCGCCGCUccggGUACC-GCAGGCGCCg -3'
miRNA:   3'- cUGGGCGGCGG----CGUGGuCGUCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 9042 0.79 0.063075
Target:  5'- gGAgCCGCCgGCCGCGCCGGUuuccGCGCCg -3'
miRNA:   3'- -CUgGGCGG-CGGCGUGGUCGuc--CGCGG- -5'
6927 3' -65.1 NC_001875.2 + 128009 0.78 0.071699
Target:  5'- --gCUGCgGCCGCGCCGGCGuGCGCCg -3'
miRNA:   3'- cugGGCGgCGGCGUGGUCGUcCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 49858 0.78 0.077407
Target:  5'- cGCCgGCCGgCGCGCCuuGCcGGCGCCa -3'
miRNA:   3'- cUGGgCGGCgGCGUGGu-CGuCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 83461 0.77 0.081451
Target:  5'- cACCUGUCGCCGCGUCGGaCGGGCGCg -3'
miRNA:   3'- cUGGGCGGCGGCGUGGUC-GUCCGCGg -5'
6927 3' -65.1 NC_001875.2 + 32450 0.77 0.087897
Target:  5'- cGACCCGCUGgCGcCGCCGGUGcGGCGCUu -3'
miRNA:   3'- -CUGGGCGGCgGC-GUGGUCGU-CCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 9698 0.77 0.092461
Target:  5'- gGGCUCGCCGUcgugCGCGCCGGCc-GCGCCg -3'
miRNA:   3'- -CUGGGCGGCG----GCGUGGUCGucCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 58236 0.76 0.094827
Target:  5'- --gCCGCCGCCGCAaCAGUuGGCGCUc -3'
miRNA:   3'- cugGGCGGCGGCGUgGUCGuCCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 45469 0.76 0.09973
Target:  5'- cGCCCGCaGCCGCGCgucUAGCGcGGUGCCa -3'
miRNA:   3'- cUGGGCGgCGGCGUG---GUCGU-CCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 90379 0.76 0.104873
Target:  5'- aGACaCGCCGCgCGCGCC-GCAaccGGCGCCu -3'
miRNA:   3'- -CUGgGCGGCG-GCGUGGuCGU---CCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 82500 0.76 0.105931
Target:  5'- cGGCCCGCCGCCcacgcugcaggaacuGUGCCAGUuucAGGUGCa -3'
miRNA:   3'- -CUGGGCGGCGG---------------CGUGGUCG---UCCGCGg -5'
6927 3' -65.1 NC_001875.2 + 29049 0.76 0.110264
Target:  5'- uACUCGCagcgGUCGUACCAGCGGGCGUg -3'
miRNA:   3'- cUGGGCGg---CGGCGUGGUCGUCCGCGg -5'
6927 3' -65.1 NC_001875.2 + 32793 0.75 0.113056
Target:  5'- uGGgCgGgCGCCGCGCCGGCAagcucggcgaacGGCGCCg -3'
miRNA:   3'- -CUgGgCgGCGGCGUGGUCGU------------CCGCGG- -5'
6927 3' -65.1 NC_001875.2 + 90028 0.75 0.128032
Target:  5'- aACUgGCCGCgGCGCCGGCGcGcGUGCCg -3'
miRNA:   3'- cUGGgCGGCGgCGUGGUCGU-C-CGCGG- -5'
6927 3' -65.1 NC_001875.2 + 108675 0.75 0.128032
Target:  5'- uGCCCgcaGCCGCCGUGCCcGCAGcCGCCc -3'
miRNA:   3'- cUGGG---CGGCGGCGUGGuCGUCcGCGG- -5'
6927 3' -65.1 NC_001875.2 + 83317 0.74 0.131239
Target:  5'- uACCCGCgggGCgCGCGCCgGGCGGcGCGCCa -3'
miRNA:   3'- cUGGGCGg--CG-GCGUGG-UCGUC-CGCGG- -5'
6927 3' -65.1 NC_001875.2 + 40852 0.74 0.131239
Target:  5'- cGCUCGCCaagaCgCGCACC-GCGGGCGCCa -3'
miRNA:   3'- cUGGGCGGc---G-GCGUGGuCGUCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.