miRNA display CGI


Results 1 - 20 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6928 5' -53.3 NC_001875.2 + 71967 0.66 0.957448
Target:  5'- cGCCGCGaaGCuCGUCcAUCAGCUuGCAcGCg -3'
miRNA:   3'- -CGGCGCg-CGcGCAG-UAGUUGA-UGU-UG- -5'
6928 5' -53.3 NC_001875.2 + 11102 0.66 0.953487
Target:  5'- gGCCGC-CGUcucgGCG-CcgCAGCUGCAAUu -3'
miRNA:   3'- -CGGCGcGCG----CGCaGuaGUUGAUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 77389 0.66 0.964664
Target:  5'- cGCUGUGCG-GCG-CcgCGGCUaACGACc -3'
miRNA:   3'- -CGGCGCGCgCGCaGuaGUUGA-UGUUG- -5'
6928 5' -53.3 NC_001875.2 + 131541 0.66 0.947536
Target:  5'- cGCaaaGCGCGCccGUGUCcGUCAACguggaguucaacgACAACg -3'
miRNA:   3'- -CGg--CGCGCG--CGCAG-UAGUUGa------------UGUUG- -5'
6928 5' -53.3 NC_001875.2 + 26298 0.66 0.944838
Target:  5'- cGCC-CGUGgGCGUCAcgcCAAUUucGCGACg -3'
miRNA:   3'- -CGGcGCGCgCGCAGUa--GUUGA--UGUUG- -5'
6928 5' -53.3 NC_001875.2 + 19448 0.66 0.949285
Target:  5'- gGCCGCGC-CGCu---UUAACUGCGAa -3'
miRNA:   3'- -CGGCGCGcGCGcaguAGUUGAUGUUg -5'
6928 5' -53.3 NC_001875.2 + 25948 0.66 0.944838
Target:  5'- cGCCGCGCcCGC--CAUCGGgUACuGCa -3'
miRNA:   3'- -CGGCGCGcGCGcaGUAGUUgAUGuUG- -5'
6928 5' -53.3 NC_001875.2 + 79138 0.66 0.953487
Target:  5'- cGCCGCgGCGgGC-UCGUUuGCcACGGCg -3'
miRNA:   3'- -CGGCG-CGCgCGcAGUAGuUGaUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 93684 0.66 0.949285
Target:  5'- cGCuCGCGUucaCGCG-CAUgGACUugGACa -3'
miRNA:   3'- -CG-GCGCGc--GCGCaGUAgUUGAugUUG- -5'
6928 5' -53.3 NC_001875.2 + 53443 0.66 0.944838
Target:  5'- gGCCaGCGCGUGCagcacugcggGUCGcUCGGCUugGCGAUc -3'
miRNA:   3'- -CGG-CGCGCGCG----------CAGU-AGUUGA--UGUUG- -5'
6928 5' -53.3 NC_001875.2 + 3556 0.66 0.944838
Target:  5'- cGCCGUG-GCGCGUC-UCAAaUACu-- -3'
miRNA:   3'- -CGGCGCgCGCGCAGuAGUUgAUGuug -5'
6928 5' -53.3 NC_001875.2 + 122076 0.66 0.953487
Target:  5'- uGCCGCGUGCGCuuggCcUCGGa-ACGGCg -3'
miRNA:   3'- -CGGCGCGCGCGca--GuAGUUgaUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 26081 0.66 0.949285
Target:  5'- uGCaGCGCGgGCGUCAcguuucucaaaUCAaACUGUAGCa -3'
miRNA:   3'- -CGgCGCGCgCGCAGU-----------AGU-UGAUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 61522 0.66 0.953487
Target:  5'- uCCGCGUGCucgcgcuugGCGgcCAUCAugUGgGACa -3'
miRNA:   3'- cGGCGCGCG---------CGCa-GUAGUugAUgUUG- -5'
6928 5' -53.3 NC_001875.2 + 98857 0.66 0.953487
Target:  5'- nCCGCgagcgcaacaccGUGCGCGUCGUaAACacggGCGACa -3'
miRNA:   3'- cGGCG------------CGCGCGCAGUAgUUGa---UGUUG- -5'
6928 5' -53.3 NC_001875.2 + 63687 0.66 0.943456
Target:  5'- cGCgGCGCGCaGCGUUcgccgaugcgguuuGUCGGuCgcgGCGACg -3'
miRNA:   3'- -CGgCGCGCG-CGCAG--------------UAGUU-Ga--UGUUG- -5'
6928 5' -53.3 NC_001875.2 + 5770 0.66 0.961172
Target:  5'- aCCGCGUucaGCGCGUCcu--GgUACGGCa -3'
miRNA:   3'- cGGCGCG---CGCGCAGuaguUgAUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 117938 0.66 0.9551
Target:  5'- gGCCgGCGUGCGCGcCgccgcguuugguuugGUCGACgACAAg -3'
miRNA:   3'- -CGG-CGCGCGCGCaG---------------UAGUUGaUGUUg -5'
6928 5' -53.3 NC_001875.2 + 113570 0.66 0.957448
Target:  5'- gGUCGCGCacgGCGCGcCAUugggcCAGC-ACGGCg -3'
miRNA:   3'- -CGGCGCG---CGCGCaGUA-----GUUGaUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 42160 0.66 0.944838
Target:  5'- gGCCGuCGCGCG-GUCA--AACguaaACGACg -3'
miRNA:   3'- -CGGC-GCGCGCgCAGUagUUGa---UGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.