miRNA display CGI


Results 1 - 20 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6928 5' -53.3 NC_001875.2 + 78714 0.73 0.644762
Target:  5'- cCCGUGUGCGUGUCGUCGucaaACUugugcauCAGCa -3'
miRNA:   3'- cGGCGCGCGCGCAGUAGU----UGAu------GUUG- -5'
6928 5' -53.3 NC_001875.2 + 52025 0.75 0.571392
Target:  5'- uGUCGgaCGUGCGCGUCAaCGACcGCGACa -3'
miRNA:   3'- -CGGC--GCGCGCGCAGUaGUUGaUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 12306 0.74 0.581797
Target:  5'- cGCCGcCGUGUGCGUgGUCAACgcgcccggcCAGCg -3'
miRNA:   3'- -CGGC-GCGCGCGCAgUAGUUGau-------GUUG- -5'
6928 5' -53.3 NC_001875.2 + 82957 0.74 0.581797
Target:  5'- cGCgGCGgGCGCGUCcUCGGCgacCGACc -3'
miRNA:   3'- -CGgCGCgCGCGCAGuAGUUGau-GUUG- -5'
6928 5' -53.3 NC_001875.2 + 54432 0.74 0.602716
Target:  5'- cGCCGaacaGCGCGUggcgGUCGUUAGCcGCGGCg -3'
miRNA:   3'- -CGGCg---CGCGCG----CAGUAGUUGaUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 100905 0.74 0.602716
Target:  5'- cGCCGCaGCGCGCGgagacgCGUCGccgcgcucGCUcccACAACg -3'
miRNA:   3'- -CGGCG-CGCGCGCa-----GUAGU--------UGA---UGUUG- -5'
6928 5' -53.3 NC_001875.2 + 56470 0.74 0.623726
Target:  5'- uCCGCGCGCGUGUUgGUCAGCgcCAAa -3'
miRNA:   3'- cGGCGCGCGCGCAG-UAGUUGauGUUg -5'
6928 5' -53.3 NC_001875.2 + 100699 0.73 0.634245
Target:  5'- uCCGCGCGCgGCG-CGUUAagcaugcacauuGCUGCGGCg -3'
miRNA:   3'- cGGCGCGCG-CGCaGUAGU------------UGAUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 111049 0.73 0.634245
Target:  5'- cCCGCGCacuGCGCGUCGaCGGCUucuacguggACGACg -3'
miRNA:   3'- cGGCGCG---CGCGCAGUaGUUGA---------UGUUG- -5'
6928 5' -53.3 NC_001875.2 + 74277 0.75 0.561032
Target:  5'- cGCCGCGCcgguuuacGCGCGaacagcgCAUCGcCUACGGCg -3'
miRNA:   3'- -CGGCGCG--------CGCGCa------GUAGUuGAUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 41849 0.75 0.550724
Target:  5'- uGCCGCGC-CGCGgCGgcgAGCUGCAACa -3'
miRNA:   3'- -CGGCGCGcGCGCaGUag-UUGAUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 65780 0.75 0.550724
Target:  5'- gGCgGCG-GCGCGUCGUCGuugagcgccaGCUugAGCg -3'
miRNA:   3'- -CGgCGCgCGCGCAGUAGU----------UGAugUUG- -5'
6928 5' -53.3 NC_001875.2 + 49931 0.82 0.236553
Target:  5'- aGCCGCGCGCGCuaaucagcugGUCGUCGgaGCUGCGcGCg -3'
miRNA:   3'- -CGGCGCGCGCG----------CAGUAGU--UGAUGU-UG- -5'
6928 5' -53.3 NC_001875.2 + 57307 0.8 0.30181
Target:  5'- -aCGgGCGCGCGUCGUCGGCgacGCAAUu -3'
miRNA:   3'- cgGCgCGCGCGCAGUAGUUGa--UGUUG- -5'
6928 5' -53.3 NC_001875.2 + 17344 0.79 0.363401
Target:  5'- cGCCGCGCGacCGCGUCAgaguGCUGCcGCa -3'
miRNA:   3'- -CGGCGCGC--GCGCAGUagu-UGAUGuUG- -5'
6928 5' -53.3 NC_001875.2 + 42570 0.78 0.405209
Target:  5'- aGCCGCGCcaggucggcgcacGCGCG-CGUCAGCU-CGGCg -3'
miRNA:   3'- -CGGCGCG-------------CGCGCaGUAGUUGAuGUUG- -5'
6928 5' -53.3 NC_001875.2 + 7042 0.77 0.423122
Target:  5'- gGCCGCGCGCuuGUCGgccugguUCcGCUGCGGCg -3'
miRNA:   3'- -CGGCGCGCGcgCAGU-------AGuUGAUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 21262 0.76 0.480541
Target:  5'- aGgCGCGCGCGCGgCG-CGGCUACGAg -3'
miRNA:   3'- -CgGCGCGCGCGCaGUaGUUGAUGUUg -5'
6928 5' -53.3 NC_001875.2 + 131071 0.76 0.51014
Target:  5'- uCCGCGCGC-CGcCGUCAGCUgccccauguGCAACa -3'
miRNA:   3'- cGGCGCGCGcGCaGUAGUUGA---------UGUUG- -5'
6928 5' -53.3 NC_001875.2 + 45429 0.75 0.53029
Target:  5'- uGCCGCGCagguuguuuuGCGCGUCGaacUCGGCgcuCGGCg -3'
miRNA:   3'- -CGGCGCG----------CGCGCAGU---AGUUGau-GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.