miRNA display CGI


Results 1 - 20 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6928 5' -53.3 NC_001875.2 + 40710 1.13 0.002407
Target:  5'- cGCCGCGCGCGCGUCAUCAACUACAACg -3'
miRNA:   3'- -CGGCGCGCGCGCAGUAGUUGAUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 49931 0.82 0.236553
Target:  5'- aGCCGCGCGCGCuaaucagcugGUCGUCGgaGCUGCGcGCg -3'
miRNA:   3'- -CGGCGCGCGCG----------CAGUAGU--UGAUGU-UG- -5'
6928 5' -53.3 NC_001875.2 + 84224 0.8 0.292597
Target:  5'- gGCCGCGCGCGCucguccaggaaaauGUCGcuguacacagUCAugUGCAGCa -3'
miRNA:   3'- -CGGCGCGCGCG--------------CAGU----------AGUugAUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 95988 0.8 0.294703
Target:  5'- cGCUGCGCaacaaaacCGCGUCGUCGAgUGCGACa -3'
miRNA:   3'- -CGGCGCGc-------GCGCAGUAGUUgAUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 57307 0.8 0.30181
Target:  5'- -aCGgGCGCGCGUCGUCGGCgacGCAAUu -3'
miRNA:   3'- cgGCgCGCGCGCAGUAGUUGa--UGUUG- -5'
6928 5' -53.3 NC_001875.2 + 100845 0.8 0.30469
Target:  5'- gGCCGCGCGCGCGUaAUCuuGCUuuuugagcgcgaggcGCAGCg -3'
miRNA:   3'- -CGGCGCGCGCGCAgUAGu-UGA---------------UGUUG- -5'
6928 5' -53.3 NC_001875.2 + 99924 0.79 0.339321
Target:  5'- gGCCGCGCGCGCGgug-CAGC-GCGGCc -3'
miRNA:   3'- -CGGCGCGCGCGCaguaGUUGaUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 81850 0.79 0.363401
Target:  5'- aCCGCGacaaGCGcCG-CGUCAGCUACAGCa -3'
miRNA:   3'- cGGCGCg---CGC-GCaGUAGUUGAUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 17344 0.79 0.363401
Target:  5'- cGCCGCGCGacCGCGUCAgaguGCUGCcGCa -3'
miRNA:   3'- -CGGCGCGC--GCGCAGUagu-UGAUGuUG- -5'
6928 5' -53.3 NC_001875.2 + 42570 0.78 0.405209
Target:  5'- aGCCGCGCcaggucggcgcacGCGCG-CGUCAGCU-CGGCg -3'
miRNA:   3'- -CGGCGCG-------------CGCGCaGUAGUUGAuGUUG- -5'
6928 5' -53.3 NC_001875.2 + 121397 0.78 0.406093
Target:  5'- cGCCGCGC-CGCGUCAa-AGCUGCuGCg -3'
miRNA:   3'- -CGGCGCGcGCGCAGUagUUGAUGuUG- -5'
6928 5' -53.3 NC_001875.2 + 110588 0.78 0.415002
Target:  5'- cGCCGCGCGCGCGcCuggacCAGCUucgcCAACu -3'
miRNA:   3'- -CGGCGCGCGCGCaGua---GUUGAu---GUUG- -5'
6928 5' -53.3 NC_001875.2 + 98941 0.78 0.415002
Target:  5'- uGCgCGaCGCGCGCGUguUCAgccguuugcagcGCUGCAGCg -3'
miRNA:   3'- -CG-GC-GCGCGCGCAguAGU------------UGAUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 7042 0.77 0.423122
Target:  5'- gGCCGCGCGCuuGUCGgccugguUCcGCUGCGGCg -3'
miRNA:   3'- -CGGCGCGCGcgCAGU-------AGuUGAUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 57034 0.77 0.433175
Target:  5'- cGCCGCuGgGCGCGUCGUacucCAGCU-CGACg -3'
miRNA:   3'- -CGGCG-CgCGCGCAGUA----GUUGAuGUUG- -5'
6928 5' -53.3 NC_001875.2 + 101999 0.77 0.442433
Target:  5'- uGCgGCGUGCGCGgcggCGgUgGACUGCAGCg -3'
miRNA:   3'- -CGgCGCGCGCGCa---GU-AgUUGAUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 21262 0.76 0.480541
Target:  5'- aGgCGCGCGCGCGgCG-CGGCUACGAg -3'
miRNA:   3'- -CgGCGCGCGCGCaGUaGUUGAUGUUg -5'
6928 5' -53.3 NC_001875.2 + 42297 0.76 0.504157
Target:  5'- gGCUGCGCGUGCGUauagacgaucccgccUAUCGGC-GCGACg -3'
miRNA:   3'- -CGGCGCGCGCGCA---------------GUAGUUGaUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 21838 0.76 0.51014
Target:  5'- aGCUGCGCGCGCGUCAaCGccACcgACcGCg -3'
miRNA:   3'- -CGGCGCGCGCGCAGUaGU--UGa-UGuUG- -5'
6928 5' -53.3 NC_001875.2 + 131071 0.76 0.51014
Target:  5'- uCCGCGCGC-CGcCGUCAGCUgccccauguGCAACa -3'
miRNA:   3'- cGGCGCGCGcGCaGUAGUUGA---------UGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.