miRNA display CGI


Results 1 - 20 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6928 5' -53.3 NC_001875.2 + 1316 0.67 0.935198
Target:  5'- aGgCGCGUGCuauuuuuaGCGgugCGUCAGCgGCGACc -3'
miRNA:   3'- -CgGCGCGCG--------CGCa--GUAGUUGaUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 1478 0.66 0.949285
Target:  5'- aGgCGCGUGCuacuuuuaGCGgugCGUCAGCgACGACc -3'
miRNA:   3'- -CgGCGCGCG--------CGCa--GUAGUUGaUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 1544 0.66 0.944838
Target:  5'- cGgCGCGUGCuauuuuuaGCGgugCGUCAGCgACGACc -3'
miRNA:   3'- -CgGCGCGCG--------CGCa--GUAGUUGaUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 1610 0.66 0.944838
Target:  5'- cGgCGCGUGCuauuuuuaGCGgugCGUCAGCgACGACc -3'
miRNA:   3'- -CgGCGCGCG--------CGCa--GUAGUUGaUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 1676 0.66 0.944838
Target:  5'- cGgCGCGUGCuauuuuuaGCGgugCGUCAGCgACGACc -3'
miRNA:   3'- -CgGCGCGCG--------CGCa--GUAGUUGaUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 1802 0.66 0.944838
Target:  5'- cGgCGCGUGCuauuuuuaGCGgugCGUCAGCaACGACc -3'
miRNA:   3'- -CgGCGCGCG--------CGCa--GUAGUUGaUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 2308 0.72 0.697009
Target:  5'- gGCCGCGCGCaGC-UCGgccagcUCGGcCUGCAGCu -3'
miRNA:   3'- -CGGCGCGCG-CGcAGU------AGUU-GAUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 2463 0.67 0.93469
Target:  5'- aUUGCGCGCGgGUCGgcgcuuuuucguaUCAAUUGUAACg -3'
miRNA:   3'- cGGCGCGCGCgCAGU-------------AGUUGAUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 2668 0.67 0.930001
Target:  5'- cGCCG-GCG-GCGcCuggggCAACUGCGGCg -3'
miRNA:   3'- -CGGCgCGCgCGCaGua---GUUGAUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 2870 0.66 0.957448
Target:  5'- --gGCGaGCGCGUCAUCcGCUcgccCAGCu -3'
miRNA:   3'- cggCGCgCGCGCAGUAGuUGAu---GUUG- -5'
6928 5' -53.3 NC_001875.2 + 3145 0.68 0.886602
Target:  5'- cGCUGCGCGgaCGCGgCGUCGG--GCGGCg -3'
miRNA:   3'- -CGGCGCGC--GCGCaGUAGUUgaUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 3556 0.66 0.944838
Target:  5'- cGCCGUG-GCGCGUC-UCAAaUACu-- -3'
miRNA:   3'- -CGGCGCgCGCGCAGuAGUUgAUGuug -5'
6928 5' -53.3 NC_001875.2 + 3919 0.72 0.717573
Target:  5'- aGCUGCGCGCugagcuuuGCGagAaacugCAGCUGCAGCg -3'
miRNA:   3'- -CGGCGCGCG--------CGCagUa----GUUGAUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 5016 0.68 0.900239
Target:  5'- uGCCcgGCGCGCGCuuuGUCAgauUCAGuCUGCGc- -3'
miRNA:   3'- -CGG--CGCGCGCG---CAGU---AGUU-GAUGUug -5'
6928 5' -53.3 NC_001875.2 + 5103 0.68 0.912896
Target:  5'- gGCUGCGCGCGCua-AUCGACg----- -3'
miRNA:   3'- -CGGCGCGCGCGcagUAGUUGauguug -5'
6928 5' -53.3 NC_001875.2 + 5539 0.68 0.900239
Target:  5'- cGCCGUugagGCGCGCGUUaaggugccaGUCAcg-GCGACu -3'
miRNA:   3'- -CGGCG----CGCGCGCAG---------UAGUugaUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 5770 0.66 0.961172
Target:  5'- aCCGCGUucaGCGCGUCcu--GgUACGGCa -3'
miRNA:   3'- cGGCGCG---CGCGCAGuaguUgAUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 6446 0.72 0.717573
Target:  5'- cGCCgucguaguaGCGCGCGguguuCGUCAggUCGAUUACGGCg -3'
miRNA:   3'- -CGG---------CGCGCGC-----GCAGU--AGUUGAUGUUG- -5'
6928 5' -53.3 NC_001875.2 + 6765 0.66 0.963984
Target:  5'- uGCCGCGCauucgcgGCGUGUuucagggCAUCAGCgacccGCAGa -3'
miRNA:   3'- -CGGCGCG-------CGCGCA-------GUAGUUGa----UGUUg -5'
6928 5' -53.3 NC_001875.2 + 6825 0.72 0.707325
Target:  5'- aGCUGCGC-CGCGUCGaCAACgugccCGACg -3'
miRNA:   3'- -CGGCGCGcGCGCAGUaGUUGau---GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.