miRNA display CGI


Results 1 - 20 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6932 5' -56.6 NC_001875.2 + 118928 0.66 0.82858
Target:  5'- aCGCUGCaCAUCCACggGCcGGCg--CUa -3'
miRNA:   3'- -GCGGCGcGUAGGUGa-CGuCCGaaaGG- -5'
6932 5' -56.6 NC_001875.2 + 119392 0.66 0.868555
Target:  5'- uGCCGCugaaugGCGUCCACcGCGGcGCg---- -3'
miRNA:   3'- gCGGCG------CGUAGGUGaCGUC-CGaaagg -5'
6932 5' -56.6 NC_001875.2 + 65552 0.66 0.836968
Target:  5'- gGCCGCGCAUUUgAC-GCAGaGCgcgugCCa -3'
miRNA:   3'- gCGGCGCGUAGG-UGaCGUC-CGaaa--GG- -5'
6932 5' -56.6 NC_001875.2 + 60282 0.66 0.82688
Target:  5'- uGCgGCGCAcuuguuggcgaCACUGCAGGCgacgcgUCg -3'
miRNA:   3'- gCGgCGCGUag---------GUGACGUCCGaa----AGg -5'
6932 5' -56.6 NC_001875.2 + 126977 0.66 0.82858
Target:  5'- gCGCCGCaGCGUgCACgagcugUGCAcGCgUUCCg -3'
miRNA:   3'- -GCGGCG-CGUAgGUG------ACGUcCGaAAGG- -5'
6932 5' -56.6 NC_001875.2 + 28929 0.66 0.827731
Target:  5'- gGCCGCGUAUUUcgagagugggGCgUGUAcggccgcGGCUUUCCg -3'
miRNA:   3'- gCGGCGCGUAGG----------UG-ACGU-------CCGAAAGG- -5'
6932 5' -56.6 NC_001875.2 + 124588 0.66 0.82858
Target:  5'- -cCCGCGCcaggCCGCUGCAGcGCg---- -3'
miRNA:   3'- gcGGCGCGua--GGUGACGUC-CGaaagg -5'
6932 5' -56.6 NC_001875.2 + 21100 0.66 0.82858
Target:  5'- uCGCCGCGCuuaaACUGCAcGCgccCCg -3'
miRNA:   3'- -GCGGCGCGuaggUGACGUcCGaaaGG- -5'
6932 5' -56.6 NC_001875.2 + 114084 0.66 0.82858
Target:  5'- aCGCCGcCGUGUCCACaagcgGCAuGGCg---- -3'
miRNA:   3'- -GCGGC-GCGUAGGUGa----CGU-CCGaaagg -5'
6932 5' -56.6 NC_001875.2 + 90383 0.66 0.868555
Target:  5'- aCGCCGCGCGcgCCGCaaCcGGCg--CCu -3'
miRNA:   3'- -GCGGCGCGUa-GGUGacGuCCGaaaGG- -5'
6932 5' -56.6 NC_001875.2 + 53443 0.66 0.868555
Target:  5'- gGCCaGCGCGUgcagCACUGCGGGUcgcUCg -3'
miRNA:   3'- gCGG-CGCGUAg---GUGACGUCCGaa-AGg -5'
6932 5' -56.6 NC_001875.2 + 110277 0.66 0.860967
Target:  5'- gGCCGCGgAg-CGC-GCGGGCUgccCCg -3'
miRNA:   3'- gCGGCGCgUagGUGaCGUCCGAaa-GG- -5'
6932 5' -56.6 NC_001875.2 + 42841 0.66 0.853168
Target:  5'- aCGCguagCGCGCAaaUCCggcgcGCcGCAGGCgcaggUCCg -3'
miRNA:   3'- -GCG----GCGCGU--AGG-----UGaCGUCCGaa---AGG- -5'
6932 5' -56.6 NC_001875.2 + 110812 0.66 0.836968
Target:  5'- aCGCCGCGCAgguggaCGC-GCuGGUgcgCCg -3'
miRNA:   3'- -GCGGCGCGUag----GUGaCGuCCGaaaGG- -5'
6932 5' -56.6 NC_001875.2 + 95759 0.66 0.867806
Target:  5'- uGCCGCGCGagCGCgucuuguUGCAGGaa--CCg -3'
miRNA:   3'- gCGGCGCGUagGUG-------ACGUCCgaaaGG- -5'
6932 5' -56.6 NC_001875.2 + 77707 0.66 0.868555
Target:  5'- uGCCGC-CGUCCGCuUGCAcGCUa--- -3'
miRNA:   3'- gCGGCGcGUAGGUG-ACGUcCGAaagg -5'
6932 5' -56.6 NC_001875.2 + 126789 0.66 0.868555
Target:  5'- gGCUGUGCAa--GCUGCGgcGGCUUUgCa -3'
miRNA:   3'- gCGGCGCGUaggUGACGU--CCGAAAgG- -5'
6932 5' -56.6 NC_001875.2 + 58198 0.66 0.860967
Target:  5'- cCGCCGCaGCcgCCGCaGCAGcCg--CCg -3'
miRNA:   3'- -GCGGCG-CGuaGGUGaCGUCcGaaaGG- -5'
6932 5' -56.6 NC_001875.2 + 33211 0.66 0.868555
Target:  5'- uGCCG-GCAaaCGCgggcGCGGGCUcgCCg -3'
miRNA:   3'- gCGGCgCGUagGUGa---CGUCCGAaaGG- -5'
6932 5' -56.6 NC_001875.2 + 277 0.66 0.868555
Target:  5'- uGCUgGCGUcgCCGCaUGCuGGCcaggUCCa -3'
miRNA:   3'- gCGG-CGCGuaGGUG-ACGuCCGaa--AGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.