miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6932 5' -56.6 NC_001875.2 + 78112 0.69 0.696043
Target:  5'- gCGUCGCGUAUCCAaucaucucCUGCAuuUUUUCCu -3'
miRNA:   3'- -GCGGCGCGUAGGU--------GACGUccGAAAGG- -5'
6932 5' -56.6 NC_001875.2 + 9042 0.7 0.624152
Target:  5'- uCGaCCGCGUA-CCGuCUGUAGGCUUgUUCg -3'
miRNA:   3'- -GC-GGCGCGUaGGU-GACGUCCGAA-AGG- -5'
6932 5' -56.6 NC_001875.2 + 73131 0.7 0.63447
Target:  5'- uGuuGCGCGUCgCGCUGUAcacGCUcUCCa -3'
miRNA:   3'- gCggCGCGUAG-GUGACGUc--CGAaAGG- -5'
6932 5' -56.6 NC_001875.2 + 42445 0.7 0.644787
Target:  5'- aCGCCuGCGuCAgcggCCGCUGC-GGCgagCCa -3'
miRNA:   3'- -GCGG-CGC-GUa---GGUGACGuCCGaaaGG- -5'
6932 5' -56.6 NC_001875.2 + 37376 0.69 0.66538
Target:  5'- aCG-CGCGCG-CCGCUGCAG--UUUCCg -3'
miRNA:   3'- -GCgGCGCGUaGGUGACGUCcgAAAGG- -5'
6932 5' -56.6 NC_001875.2 + 83593 0.69 0.66538
Target:  5'- aCGCCGCGCGccuuaUUCACggUGUucGGCgcgUUCCg -3'
miRNA:   3'- -GCGGCGCGU-----AGGUG--ACGu-CCGa--AAGG- -5'
6932 5' -56.6 NC_001875.2 + 90466 0.69 0.67564
Target:  5'- gGCgGCGCGUaauuUCGCUGCAGcGCgcgUUCa -3'
miRNA:   3'- gCGgCGCGUA----GGUGACGUC-CGa--AAGg -5'
6932 5' -56.6 NC_001875.2 + 113491 0.69 0.67564
Target:  5'- aCGCCGUugGCGUCCaugccgagcuGCUGCAaagucGGCgcUUCCg -3'
miRNA:   3'- -GCGGCG--CGUAGG----------UGACGU-----CCGa-AAGG- -5'
6932 5' -56.6 NC_001875.2 + 97879 0.69 0.685865
Target:  5'- gGCUGCGCG-CCGCacgggcacguUGCGGGCgucggcgCCg -3'
miRNA:   3'- gCGGCGCGUaGGUG----------ACGUCCGaaa----GG- -5'
6932 5' -56.6 NC_001875.2 + 12417 0.71 0.603542
Target:  5'- uGCCGCGCG-CCAa-GCAGGCcgUUgCg -3'
miRNA:   3'- gCGGCGCGUaGGUgaCGUCCGa-AAgG- -5'
6932 5' -56.6 NC_001875.2 + 39326 0.71 0.603542
Target:  5'- gCGgCGUGCG-CgCGCUGCAGGCgcagCCu -3'
miRNA:   3'- -GCgGCGCGUaG-GUGACGUCCGaaa-GG- -5'
6932 5' -56.6 NC_001875.2 + 84830 0.71 0.572806
Target:  5'- gCGCCGCGC-UCCACcaGCAG-CUccUCCa -3'
miRNA:   3'- -GCGGCGCGuAGGUGa-CGUCcGAa-AGG- -5'
6932 5' -56.6 NC_001875.2 + 50100 0.8 0.174966
Target:  5'- cCGCCGCGgaAUCCACUGCAGGUcgUUg -3'
miRNA:   3'- -GCGGCGCg-UAGGUGACGUCCGaaAGg -5'
6932 5' -56.6 NC_001875.2 + 128692 0.79 0.208683
Target:  5'- uCGCCGCccgacgccGCGUCCGCgcaGCGGGCUUcgCCg -3'
miRNA:   3'- -GCGGCG--------CGUAGGUGa--CGUCCGAAa-GG- -5'
6932 5' -56.6 NC_001875.2 + 91123 0.76 0.306223
Target:  5'- gCGuCUGCGCGUCCuugacguACUGCAGGCUUg-- -3'
miRNA:   3'- -GC-GGCGCGUAGG-------UGACGUCCGAAagg -5'
6932 5' -56.6 NC_001875.2 + 43027 0.76 0.314126
Target:  5'- uGCCGCGCG-CCGCggcgcGCGGGCUaUUUCa -3'
miRNA:   3'- gCGGCGCGUaGGUGa----CGUCCGA-AAGG- -5'
6932 5' -56.6 NC_001875.2 + 7042 0.76 0.319235
Target:  5'- gGCCGCGCGcuugucggccugguUCCGCUGC-GGCgacgCCa -3'
miRNA:   3'- gCGGCGCGU--------------AGGUGACGuCCGaaa-GG- -5'
6932 5' -56.6 NC_001875.2 + 124980 0.74 0.436901
Target:  5'- uCGCCGCGCGUCCGCuuuacgUGCAaguuGGCg--UCg -3'
miRNA:   3'- -GCGGCGCGUAGGUG------ACGU----CCGaaaGG- -5'
6932 5' -56.6 NC_001875.2 + 45704 0.71 0.552518
Target:  5'- uCGCCGCGCGcgccgCgCACUGCcgauGGCcacgUCCa -3'
miRNA:   3'- -GCGGCGCGUa----G-GUGACGu---CCGaa--AGG- -5'
6932 5' -56.6 NC_001875.2 + 79625 0.71 0.562637
Target:  5'- aGUCGCGCGUCCAguUUGCAcGGCgcgcagUCg -3'
miRNA:   3'- gCGGCGCGUAGGU--GACGU-CCGaa----AGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.