miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6932 5' -56.6 NC_001875.2 + 277 0.66 0.868555
Target:  5'- uGCUgGCGUcgCCGCaUGCuGGCcaggUCCa -3'
miRNA:   3'- gCGG-CGCGuaGGUG-ACGuCCGaa--AGG- -5'
6932 5' -56.6 NC_001875.2 + 2249 0.66 0.845166
Target:  5'- uGCCGCaGCAacuggcugUCGCUGCGGGCc---- -3'
miRNA:   3'- gCGGCG-CGUa-------GGUGACGUCCGaaagg -5'
6932 5' -56.6 NC_001875.2 + 3188 0.67 0.802359
Target:  5'- gGCCGCGCA-CCAgaGaCAGGUUg--- -3'
miRNA:   3'- gCGGCGCGUaGGUgaC-GUCCGAaagg -5'
6932 5' -56.6 NC_001875.2 + 3880 0.67 0.793294
Target:  5'- -aCCGCGCcgCCAagcuggGCAGGCUguaCa -3'
miRNA:   3'- gcGGCGCGuaGGUga----CGUCCGAaagG- -5'
6932 5' -56.6 NC_001875.2 + 6765 0.69 0.685865
Target:  5'- uGCCGCGCAUUCGCgGCguguuucaGGGCa---- -3'
miRNA:   3'- gCGGCGCGUAGGUGaCG--------UCCGaaagg -5'
6932 5' -56.6 NC_001875.2 + 7042 0.76 0.319235
Target:  5'- gGCCGCGCGcuugucggccugguUCCGCUGC-GGCgacgCCa -3'
miRNA:   3'- gCGGCGCGU--------------AGGUGACGuCCGaaa-GG- -5'
6932 5' -56.6 NC_001875.2 + 8476 0.68 0.736122
Target:  5'- aCGUCGCGCGgaaacaCCAC-GcCGGGCgccgUCCg -3'
miRNA:   3'- -GCGGCGCGUa-----GGUGaC-GUCCGaa--AGG- -5'
6932 5' -56.6 NC_001875.2 + 9042 0.7 0.624152
Target:  5'- uCGaCCGCGUA-CCGuCUGUAGGCUUgUUCg -3'
miRNA:   3'- -GC-GGCGCGUaGGU-GACGUCCGAA-AGG- -5'
6932 5' -56.6 NC_001875.2 + 9051 0.68 0.745935
Target:  5'- gGCCGCGCcgguuUCCGC-GCcGG-UUUCCg -3'
miRNA:   3'- gCGGCGCGu----AGGUGaCGuCCgAAAGG- -5'
6932 5' -56.6 NC_001875.2 + 12417 0.71 0.603542
Target:  5'- uGCCGCGCG-CCAa-GCAGGCcgUUgCg -3'
miRNA:   3'- gCGGCGCGUaGGUgaCGUCCGa-AAgG- -5'
6932 5' -56.6 NC_001875.2 + 13894 0.67 0.802359
Target:  5'- uCGCUGCaacgggucacgGCGUCUACUGCGaGCgggCCg -3'
miRNA:   3'- -GCGGCG-----------CGUAGGUGACGUcCGaaaGG- -5'
6932 5' -56.6 NC_001875.2 + 14504 0.66 0.842727
Target:  5'- -cCCGCGCuuauUCCGCUgucgggggaacuugGCGGGCacgCCg -3'
miRNA:   3'- gcGGCGCGu---AGGUGA--------------CGUCCGaaaGG- -5'
6932 5' -56.6 NC_001875.2 + 17101 0.68 0.765249
Target:  5'- aGCCGCGCG-CCACU---GGCgg-CCg -3'
miRNA:   3'- gCGGCGCGUaGGUGAcguCCGaaaGG- -5'
6932 5' -56.6 NC_001875.2 + 18167 0.67 0.811267
Target:  5'- gCGCgCGaCGCcgCCACUGU-GGCggugCCg -3'
miRNA:   3'- -GCG-GC-GCGuaGGUGACGuCCGaaa-GG- -5'
6932 5' -56.6 NC_001875.2 + 19865 0.72 0.542453
Target:  5'- gGCCGCGUcgCgGC-GCGGGCg--CCg -3'
miRNA:   3'- gCGGCGCGuaGgUGaCGUCCGaaaGG- -5'
6932 5' -56.6 NC_001875.2 + 20739 0.66 0.860967
Target:  5'- uGCCGUGCAcgCCGCaacaaaAGGUUUUCa -3'
miRNA:   3'- gCGGCGCGUa-GGUGacg---UCCGAAAGg -5'
6932 5' -56.6 NC_001875.2 + 21024 0.74 0.427885
Target:  5'- gCGCaccaGCGCGUCCAcCUGCGcGGCguuguaUCCg -3'
miRNA:   3'- -GCGg---CGCGUAGGU-GACGU-CCGaa----AGG- -5'
6932 5' -56.6 NC_001875.2 + 21100 0.66 0.82858
Target:  5'- uCGCCGCGCuuaaACUGCAcGCgccCCg -3'
miRNA:   3'- -GCGGCGCGuaggUGACGUcCGaaaGG- -5'
6932 5' -56.6 NC_001875.2 + 23165 0.66 0.845166
Target:  5'- gGCUGCggGCAcggCgGCUGCGGGCacggCCg -3'
miRNA:   3'- gCGGCG--CGUa--GgUGACGUCCGaaa-GG- -5'
6932 5' -56.6 NC_001875.2 + 28929 0.66 0.827731
Target:  5'- gGCCGCGUAUUUcgagagugggGCgUGUAcggccgcGGCUUUCCg -3'
miRNA:   3'- gCGGCGCGUAGG----------UG-ACGU-------CCGAAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.