miRNA display CGI


Results 1 - 20 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6932 5' -56.6 NC_001875.2 + 43129 1.13 0.001166
Target:  5'- cCGCCGCGCAUCCACUGCAGGCUUUCCg -3'
miRNA:   3'- -GCGGCGCGUAGGUGACGUCCGAAAGG- -5'
6932 5' -56.6 NC_001875.2 + 50100 0.8 0.174966
Target:  5'- cCGCCGCGgaAUCCACUGCAGGUcgUUg -3'
miRNA:   3'- -GCGGCGCg-UAGGUGACGUCCGaaAGg -5'
6932 5' -56.6 NC_001875.2 + 128692 0.79 0.208683
Target:  5'- uCGCCGCccgacgccGCGUCCGCgcaGCGGGCUUcgCCg -3'
miRNA:   3'- -GCGGCG--------CGUAGGUGa--CGUCCGAAa-GG- -5'
6932 5' -56.6 NC_001875.2 + 91123 0.76 0.306223
Target:  5'- gCGuCUGCGCGUCCuugacguACUGCAGGCUUg-- -3'
miRNA:   3'- -GC-GGCGCGUAGG-------UGACGUCCGAAagg -5'
6932 5' -56.6 NC_001875.2 + 43027 0.76 0.314126
Target:  5'- uGCCGCGCG-CCGCggcgcGCGGGCUaUUUCa -3'
miRNA:   3'- gCGGCGCGUaGGUGa----CGUCCGA-AAGG- -5'
6932 5' -56.6 NC_001875.2 + 7042 0.76 0.319235
Target:  5'- gGCCGCGCGcuugucggccugguUCCGCUGC-GGCgacgCCa -3'
miRNA:   3'- gCGGCGCGU--------------AGGUGACGuCCGaaa-GG- -5'
6932 5' -56.6 NC_001875.2 + 21024 0.74 0.427885
Target:  5'- gCGCaccaGCGCGUCCAcCUGCGcGGCguuguaUCCg -3'
miRNA:   3'- -GCGg---CGCGUAGGU-GACGU-CCGaa----AGG- -5'
6932 5' -56.6 NC_001875.2 + 94629 0.74 0.436901
Target:  5'- gGCuUGCuGCA-CCGCUGCgccAGGCUUUCCu -3'
miRNA:   3'- gCG-GCG-CGUaGGUGACG---UCCGAAAGG- -5'
6932 5' -56.6 NC_001875.2 + 124980 0.74 0.436901
Target:  5'- uCGCCGCGCGUCCGCuuuacgUGCAaguuGGCg--UCg -3'
miRNA:   3'- -GCGGCGCGUAGGUG------ACGU----CCGaaaGG- -5'
6932 5' -56.6 NC_001875.2 + 52362 0.73 0.464587
Target:  5'- uGCCGCGCcagcGUCCAagagcgcaagUGCAGGUgcgUCCa -3'
miRNA:   3'- gCGGCGCG----UAGGUg---------ACGUCCGaa-AGG- -5'
6932 5' -56.6 NC_001875.2 + 91165 0.72 0.502865
Target:  5'- gCGCCGCGUcaugGUCCACaGCGGcGCUUg-- -3'
miRNA:   3'- -GCGGCGCG----UAGGUGaCGUC-CGAAagg -5'
6932 5' -56.6 NC_001875.2 + 89393 0.72 0.542453
Target:  5'- uCGCCGCaGCggCCGCUgacGCAGGCgUUUgCg -3'
miRNA:   3'- -GCGGCG-CGuaGGUGA---CGUCCG-AAAgG- -5'
6932 5' -56.6 NC_001875.2 + 19865 0.72 0.542453
Target:  5'- gGCCGCGUcgCgGC-GCGGGCg--CCg -3'
miRNA:   3'- gCGGCGCGuaGgUGaCGUCCGaaaGG- -5'
6932 5' -56.6 NC_001875.2 + 45704 0.71 0.552518
Target:  5'- uCGCCGCGCGcgccgCgCACUGCcgauGGCcacgUCCa -3'
miRNA:   3'- -GCGGCGCGUa----G-GUGACGu---CCGaa--AGG- -5'
6932 5' -56.6 NC_001875.2 + 101896 0.71 0.562637
Target:  5'- gCGCCGuCGCcuUCgGCUGCcuGGGCggUCCc -3'
miRNA:   3'- -GCGGC-GCGu-AGgUGACG--UCCGaaAGG- -5'
6932 5' -56.6 NC_001875.2 + 79625 0.71 0.562637
Target:  5'- aGUCGCGCGUCCAguUUGCAcGGCgcgcagUCg -3'
miRNA:   3'- gCGGCGCGUAGGU--GACGU-CCGaa----AGg -5'
6932 5' -56.6 NC_001875.2 + 84830 0.71 0.572806
Target:  5'- gCGCCGCGC-UCCACcaGCAG-CUccUCCa -3'
miRNA:   3'- -GCGGCGCGuAGGUGa-CGUCcGAa-AGG- -5'
6932 5' -56.6 NC_001875.2 + 54186 0.71 0.593265
Target:  5'- gCGCUGCGUuggcGUCCACcagacacacgUGCAGGCcgUCg -3'
miRNA:   3'- -GCGGCGCG----UAGGUG----------ACGUCCGaaAGg -5'
6932 5' -56.6 NC_001875.2 + 12417 0.71 0.603542
Target:  5'- uGCCGCGCG-CCAa-GCAGGCcgUUgCg -3'
miRNA:   3'- gCGGCGCGUaGGUgaCGUCCGa-AAgG- -5'
6932 5' -56.6 NC_001875.2 + 39326 0.71 0.603542
Target:  5'- gCGgCGUGCG-CgCGCUGCAGGCgcagCCu -3'
miRNA:   3'- -GCgGCGCGUaG-GUGACGUCCGaaa-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.